Halomonas sp. A3H3: HALA3H3_p20004
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Entry
HALA3H3_p20004 CDS
T10226
Name
(GenBank) RecD/TraA family helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
haah Halomonas sp. A3H3
Pathway
haah03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
haah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HALA3H3_p20004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
haah03400
]
HALA3H3_p20004
Enzymes [BR:
haah01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HALA3H3_p20004
DNA repair and recombination proteins [BR:
haah03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HALA3H3_p20004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
UvrD_C_2
OB_YrrC
SH3_13
Viral_helicase1
HHH_5
AAA_11
AAA_22
nSTAND3
AAA_5
AAA_16
Helicase_RecD
HHH
AAA_28
UvrD-helicase
HHH_2
SLFN-g3_helicase
AAA_18
NTPase_1
AAA
HHH_3
KTI12
RecR_HhH
AAA_17
RuvB_N
RsgA_GTPase
ParA
Motif
Other DBs
NCBI-ProteinID:
CDG56057
LinkDB
All DBs
Position
hala3h3_p:34717..36882
Genome browser
AA seq
721 aa
AA seq
DB search
MDNLEQLSGVVADVRFVGEEGFQILTVRDEAEREVTLVAVCQPLNEGESVEAHGAWTTHP
RFGQQFKAERLVTQVPRGSKALGAYLASGKVAGVGPTFAKRLVAHFGDGLRDVLGDEKAL
RAVPGIGKKKAARIAGSWNEYEEAREALIFLQGHGLGASRAMSVFRQLGQDTIAKVSANP
YRTLLKTRGIGFRIADTMARSMGFELTHRDRIIAGLRHVVDARSASGHTLATSGELASEG
AKLLEVDVARTTSVVELLLAHEKLEQVDGGLVGLPALINAERTVAAALLARSVPWEDSGL
ASVDGELSDGRVLSDEQREALVTCLAYGVAVLTGGPGVGKTTVTEVLAQTLDDSRYELAL
CAPTGRAARRMSEATGRPATTIHRLLGAGANGFEFNADNPIEADVVIIDEASMVDVQLFR
ALVVALPDHCRLYIIGDQDQLASVGPGNVLRDVIASGRVPVARLQKIRRQGEGSQIIVQA
HAVNQGHPPQSVPGSDFEIVAVPEGSDPELVLQEAFRVATTEMLAHGFDTLHEVQVLTPM
HGGPVGTRSLNDALRAYHIPGDRGSVTINGRRWAAGDKIVQTENDYNREVFNGDLGFVVA
ADPEEKTVLARFEDREVLFTSDALGKLQLAYAMTGHKAQGSEFPAVVIPLARSHWHMLER
QWLYTSITRGKRRVVLVGHPSAIERAARHVTGQRRLTSLPLWLRQPTPAIEEGEPHGQPS
A
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacaacctggagcagttgagcggagtggttgccgatgtccgtttcgtgggcgaggag
ggattccagatcctgaccgtgcgcgatgaggcggaacgcgaggtgaccctcgtggcggtg
tgccagccgctcaacgagggggagtcggtagaggctcatggcgcctggacgacccatccc
cgcttcgggcagcagttcaaggccgagaggctggtgacccaggtgccccgggggtcgaag
gccctgggcgcctacctggccagcggcaaggtggccggtgtcggcccgaccttcgccaag
cggctggtcgcgcacttcggtgacggcctgcgggatgtcctgggcgacgagaaagccctg
cgagcggtgcccggtatcggcaagaagaaggccgcacggatcgccggcagctggaacgag
tatgaggaagcccgggaagccctgatcttcctccaggggcacggcctcggcgcctcgcgg
gccatgtcggtattccgccagctgggccaggacaccatcgcgaaggtgtcggccaacccc
taccgcaccttgctcaagactcgcggcatcgggtttcgcatcgccgacaccatggcgcgg
tcgatgggcttcgagctgacgcaccgggatcgcatcatcgccggcctgcgtcatgtcgtg
gatgcccgctcagcctcgggccacacgttggcaacctcgggggagttggcctcggaaggc
gcgaagctcctcgaggtggatgtggcacgcacgacctcggtggttgagctgctgctggcg
cacgagaagctggagcaggtggatggcgggctggtgggattgccggcgctgatcaatgca
gagcgcacggtcgccgctgccctgctggcgcgatcggtcccctgggaggacagcgggctg
gccagtgtcgatggcgagctatccgatgggcgcgtgctcagcgacgagcagcgtgaagcc
ctggtgacctgtctggcctatggcgtggcggtgctcacgggcggcccgggggtcggcaag
accacggtgaccgaggtgctggcgcagaccctggatgacagtcgctatgagctggcgctg
tgtgcgcctaccgggcgagccgcacgccggatgagcgaggcgaccgggcgacccgcgacg
accattcaccggctgctgggggctggcgccaacggcttcgagttcaatgcggacaacccg
atcgaggcggacgtggtgatcatcgatgaggcctcgatggtggacgtgcagctgttccgc
gccctcgtcgtcgccctgcccgaccactgccggctctacatcatcggtgaccaagatcag
ctggcctcggttggcccggggaacgtcctgcgggatgtgatcgcctcggggcgagtgcct
gtcgcccggttgcagaagatccgccgccagggggaaggctcccagatcatcgtccaggcg
cacgccgtcaatcagggacacccgccccagtctgtcccgggtagcgacttcgagattgtc
gcggtgcccgagggcagtgacccggagctggtcctccaggaggcgttccgcgtggccacg
accgagatgctggcgcatggcttcgacactctgcatgaggtgcaggtgttgacgcccatg
cacggcggcccggtgggcacccgatcgctcaatgacgcgctgcgggcctatcacatcccc
ggcgaccggggctcggtgacgatcaatggccggcgctgggcggccggcgacaagatcgtg
cagaccgagaacgactacaaccgggaggtcttcaatggcgacctcgggttcgtggtggcg
gccgaccccgaggaaaagacggtgctggcgcgattcgaggaccgggaggtgctgttcacc
agcgatgccctcggcaagttgcagctcgcctacgccatgaccggccacaaggcccagggg
tcggagttccccgccgtggtgatcccgctggcgcgatcgcactggcacatgctcgagcgg
cagtggctctacaccagcatcacccgggggaagcgccgcgtggtgctcgtgggccacccc
tcggccatcgagcgagcggcccggcacgtcaccgggcagcggcggctgacctccctgccg
ctgtggctgcgccagcccacccctgcaatagaagaaggagagccccatggccaaccgagc
gcttga
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