Halomonas sp. A020: HaloA020_00800
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Entry
HaloA020_00800 CDS
T10931
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
haaz Halomonas sp. A020
Pathway
haaz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
haaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HaloA020_00800 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
haaz03400
]
HaloA020_00800 (recB)
Enzymes [BR:
haaz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HaloA020_00800 (recB)
DNA repair and recombination proteins [BR:
haaz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HaloA020_00800 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BCB59379
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All DBs
Position
80658..84332
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AA seq
1224 aa
AA seq
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MSQPAPLNPLTLPLHGSRLIEASAGTGKTFTIALLYVRLVLGGQHSDDDTAFVRPLTPPE
ILVVTFTNAATQELRERIRHRLVEAAAVFRHQGEDSLLLALRSQYPEATWPACARRLELA
AEWMDEAAVSTIHSWCYRMLREHAFDSGSLFSLNLENDQQELEQEVVRDYWRTFYYPLDA
EALGSITSYWKSPDQLHGQVRKLLAESEALGSPRPAPEQTLSAAQAERSARLAELKAPWP
AWLNDLVPALEDAAKRKAFKGQSFNAKSRANWLSSLREWCDSDATRPALTPAAWKRLTPE
GMAEIWKEGAPPCPAAWEALAELPAALNTLPEPRNDLLIHAVQWCKVRLEREQERRAEMG
PNDLLTHLDRALQGPNKEALAAQILRQFPVALIDEFQDTDPIQYRIFNAVYGVANPRRDA
AMLLIGDPKQAIYAFRGADIFTYLKAREDTAGRHVTLGTNFRSSRAMVEAVNHCFRYADE
HPAGAFLFREEGGNNPLPFLPVEAKGRSEQLIHQGQPLPAMTLWPLAADEPLAKTAYQTE
MAERCASYMAELLSAGQQGKSGFQTDDTLIPLKPSDMAVLVNGLQEARAIRQALASRGVK
SVYLSDHDKVFSSPMAAQVERWLRACAEPLASSRQAEAHLRAALATPVLGLSLAELDHLQ
QNELAWEERVEQFSHYHRLWQRQGVLPLVRRMMVDFDIPARLLAEFEEGERLLTDLLHLG
ELLQQASAELDGEHALIRFLFDAIADPESHGDSHKLRLESDEDLVKVVTIHKSKGLEYPL
VFLPFIANHRPVKAEDVPLRWHDGEGNLQLSLEADDAILATADRERLGEDLRKLYVALTR
ARHATWLGLAPLKGLENSALGYLLKGGNALSPEALNKALGELVEGSEIQVHQPPAPTTER
VAQVAQSSELGHARTPTRPAKEHWWIASYSALRLSGTLIAPVLPPLEPTTAQEATAFEVL
DEPRDLSQPEAYHLHKFPRGPGPGTFLHGLLEWAGKQGFDTAANNMDALNDMLWRRVQLR
GWQAWQEPLAGWLSTLLTTPLPLAAPTPQSVALNDLESYQVELEFWFAAKRVNTQAIDTL
VSKHLLPGVERPALDADTLNGMLKGFIDLAFEHQGRFYVLDWKSNYLGPNDSAYELEALR
HALLAKRYDLQAALYLLAMHRLLKARLPDYDPHQHLGGSMTVFLRGSRSPGRGVVGEPAP
VELIEALDSLFAGEPHATQQEATA
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgagccagcccgccccgctgaacccgctgacgctgccgcttcacggcagccgtttgatc
gaagccagcgcgggcacggggaaaaccttcaccatcgcgctgctctacgtgcgcctggtg
ctgggcgggcagcacagtgacgacgacaccgcctttgtacgcccgctcaccccgccggaa
attctggtggtcacgttcaccaacgccgccacccaggagctgcgcgaacgtatccgccac
cggctagtggaagcggcggcggtgtttcggcatcagggtgaagactcacttctgctcgcg
ctgcgcagccaataccccgaggccacgtggcccgcctgtgcccgccgcttagagctggct
gctgagtggatggacgaagccgccgtttccactattcatagctggtgctaccgcatgctg
cgcgagcacgccttcgatagcggcagcctgttctcgctcaatttggaaaacgaccagcaa
gagctggagcaagaggtagtgcgcgactactggcgcaccttctactacccgctggacgcc
gaggcgctgggcagcattaccagctactggaagtcgccggaccagctccacgggcaggtg
cgcaaactgttggccgaaagcgaggccctaggcagcccgcgccccgcgccagagcaaacc
ctaagcgccgcccaagccgagcgcagcgcacgcctagccgagctaaaagccccctggcct
gcgtggctgaatgacctagtgcccgcactggaagacgccgccaaacgcaaagccttcaaa
ggccagagcttcaacgccaaaagccgcgccaactggctaagctcgctgcgggagtggtgc
gacagcgacgccacccgccccgcactcacccccgccgcctggaaacgcctcaccccagag
ggcatggcagaaatatggaaagagggcgcgcccccttgccccgccgcctgggaagcactg
gccgaacttcccgccgccctgaacaccctgcccgagccacgcaacgacctgctgattcac
gccgtgcagtggtgcaaggtgcgtctggagcgggagcaagagcgccgcgccgaaatgggc
cccaacgacttgctcacccacctggaccgcgcactgcaaggccccaacaaagaggcgctg
gccgcgcagatactgcgccagttccccgtggcgctgatcgacgaattccaagacaccgac
cccatccaataccgcatcttcaacgcggtgtacggggtcgccaacccccgccgagacgct
gccatgctgctgatcggcgaccccaagcaggccatttacgcctttcgcggcgcggatatc
ttcacctacctcaaagcccgcgaagacaccgcaggccgccacgtgacgctgggcaccaac
ttccgctctagccgcgccatggtcgaggcggtgaaccactgcttccgctacgccgatgaa
cacccggcaggggccttcctgttccgcgaagaaggcggcaacaacccgctgccctttctg
ccggtagaggccaaaggccgcagtgagcagctcattcaccaaggccagccgctgcccgcg
atgacgctctggccgctggccgccgacgagccgctcgccaaaaccgcctaccaaaccgag
atggccgaacgctgcgcctcgtatatggcggaactgctcagcgcaggccagcaaggcaag
agcggctttcaaaccgacgatacgctcatcccgctcaagccttccgatatggcggtactg
gtgaacggcctgcaggaagcccgcgccattcgccaagcgctggccagccgtggagtgaag
agcgtgtatctctctgaccacgataaggtatttagctcgcccatggccgcccaggtagag
cgctggctgcgcgcctgcgccgaaccgctggccagctcccgccaagccgaagcgcacctg
cgcgccgcgctggccacgccggtgctggggctaagcctggcggagctggaccacctgcaa
caaaacgagctggcctgggaagagcgggtagagcagttcagccactaccaccgcctatgg
cagcgccagggcgtgctgccgctggtgcgccgcatgatggtggattttgatattcccgcc
cgcctgctggcggagtttgaagagggtgagcgcttgctcaccgacctgctgcacctgggc
gaactgctgcaacaggccagcgccgaactggacggcgaacacgcgctgattcgctttctg
tttgacgccatcgccgacccggaaagccacggcgacagccacaaactgcgcctggagagc
gacgaggatttggtcaaggtggtcaccatccacaaatccaaagggctggagtacccgctg
gtgttcctgcccttcatcgccaaccaccgcccggttaaagccgaagacgtaccgctgcgc
tggcacgatggcgaaggcaacctgcagctcagcttagaagcggatgacgcgatactcgcc
accgccgaccgcgaacggctgggggaagacctgcgcaaactctacgtcgcgcttacccgc
gcccgccacgccacctggctggggctagccccgctgaaaggcctggagaacagcgcgctg
ggctacctgctaaaaggcggcaatgccctttcaccggaggcgctcaataaagcgcttggt
gagctggtggaaggcagcgagatacaggttcaccaaccgcccgcgcccaccacagagcgc
gtggcacaagtggcgcaaagcagtgagctgggccacgcccgcacgcccacgcgacccgcc
aaagagcactggtggattgccagttactccgcgctgcggctttccggcacgcttatcgcc
ccggtgttgccaccgctggaaccgaccaccgcccaggaagccaccgcgtttgaagtgctg
gatgaacctcgggatctatctcaaccggaagcgtatcacctgcacaaattcccccgtggc
cccggccccggcacctttctgcacgggctgctggagtgggcgggcaagcaaggcttcgac
accgccgccaacaatatggacgccctcaacgacatgctgtggaggcgggtgcagctacgc
ggctggcaggcatggcaagaaccgctggcgggctggctaagcaccctgctcaccacgccg
ctaccgctggccgcgcccaccccgcaaagcgtggcgctgaatgatttagaaagctaccaa
gtagagctagagttctggtttgccgccaagcgggtgaacacccaagccattgatacgctg
gtgagcaaacacttactgccaggggtagagcgcccagcgctggatgccgacactctgaac
ggcatgctgaaaggcttcattgacttggccttcgagcaccaggggcgcttttacgtgctg
gactggaaatcgaactacctaggccccaacgacagcgcctacgaactcgaggccctgcgc
cacgcgttgctggccaaacgctacgacctgcaggccgcgctctacttactcgccatgcac
cggcttttaaaagcgcgcctgccggattacgacccgcaccagcatttgggcggttcgatg
acggtatttctgcgcggcagccgcagccctgggcgcggcgtggtgggcgaacccgccccg
gttgaactcatcgaagccctggatagcctgtttgcaggcgagccacacgccacccagcag
gaggccacggcatga
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