Halomonas sp. A020: HaloA020_13370
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Entry
HaloA020_13370 CDS
T10931
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
haaz Halomonas sp. A020
Brite
KEGG Orthology (KO) [BR:
haaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haaz03021
]
HaloA020_13370 (rapA)
Transcription machinery [BR:
haaz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
HaloA020_13370 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
BCB60636
LinkDB
All DBs
Position
complement(1462999..1465947)
Genome browser
AA seq
982 aa
AA seq
DB search
MSDFSPGQRWISDGEAELGLGTVLNCDARSVTILFSASQETRTYNTRQAPLTRVMFGSGD
RVLSADGWQMIVDDSKESRGLITYIGEDSDGTLRELPEAKLADTMQFDQARDRLLTGQVD
RNDWFDLRFRTLHHFQRIEQHGALGFAGPRIDLIPHQLYIADEVAGRHAPRVLLADEVGL
GKTIEAGLILHRLLLAGRVERALILVPDSLTHQWLVELLRRFSLNVTLLDEHQSQAHGSA
NPFESAQLVLASQGWLFANIHRQDQALASRFDLLIVDEAHHLDWSPEKSGPGYQCVEQLA
AEIPGLLLLTATPEQMGLESHFARLRLLDAERYHDIERFKEEEQHYVAVAGAIDALEELP
HTASARERVAAVADDRDSQALLATLCHPEASPEQQDAARAQLRDALLDRHGTGRVMFRNS
RRHVGGFPERRLHLAPLELPSAYRRVLRRLERDDDYLDELLIETGMDHPDVLIYPDAMYR
ELSNDPLNTEAWWHIDPRVNWLLEKLSDDSETGFANDKVLVIAHHRETAEGLAEGLRVLG
GYHAPVFHEGLSLVERDRAAAAFADEEDGCQVLVCSEIGSEGRNFQFCRHLVMFDMPQHP
DQLEQRIGRLDRIGQRHAIELHVPTFTGSPGERLLRWYHEGMDAFSAPHGVGSDLFDAFG
DALADALLDDEMLDEIIDETREMFIAKLAERDAGRNRLLELNACRPTRARQVIDAVRELD
EDPALPRYVERALDIFGVDSQEIGNGLLHLQPSQHMLDGLPGLVKGEEGFSATYSRAQAL
ARDDVQRLSWEHPLVREMMGRVLDGTMGNTALALLRHPAIPSGRLMAELVFRTHCPAPKS
LHLNRFLPPTAVRVLLDESGANLTSKISFTGLGKNLQKVNKSLARDLIKSRHDQLRELLT
QGESEAERELPSIVEAAEIRMRAQLDAELARLTALAEHNPAVRSEELEALQQERQALSSA
IENTRLRLDSVRVIITVDPNAN
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatttttctcccggccagcgctggattagcgacggcgaagccgagcttggactc
ggcaccgtgcttaactgcgacgcccgtagcgttaccattttgttcagtgccagccaggaa
acccgcacctacaacactcgccaggcgccgctcacccgcgtgatgttcggcagcggcgac
cgcgttctctctgccgatggctggcagatgatcgtcgatgacagcaaagagagtcgcggc
ctgatcacctacatcggtgaagacagcgacggcactctgcgcgagctgcccgaggccaag
ctggccgataccatgcagttcgatcaggcccgcgaccgcttgctcaccggtcaagtcgac
cgcaacgactggtttgatcttcgctttcgcactcttcaccacttccagcgcatcgagcag
cacggggccctcggttttgccgggccgcgcatcgacctcataccccatcagctctatatt
gccgacgaagtcgccggacgccatgcgccgcgggttctgttggccgacgaagtgggcctg
ggcaaaaccatcgaagccggcctgattcttcaccgcctgctgctggctggccgggtagag
cgcgcgctgatattggtgcccgacagcctgacccaccagtggttggtcgaactgctgcgc
cgcttctcgctgaacgtcactctgctggacgagcaccagagccaggcccacggcagcgcc
aacccgttcgagagcgcccagctcgtgctggctagccaaggctggctgtttgccaacatt
catcgccaggaccaagccctggccagccgcttcgacctgctgatcgtcgatgaggcccac
cacctggattggagcccggagaagagcggccccggctaccagtgcgtggaacagctcgcc
gccgagattcccggcctgctgctgcttaccgccacgccggagcagatgggtctggaaagc
cacttcgcccgcctgcggctactagacgccgagcgttaccacgacatcgagcgcttcaaa
gaggaggagcagcactacgtcgcggtggcaggcgccatcgatgccctggaggagctgccg
cacaccgcgagcgcccgcgaacgcgtcgccgccgtggccgacgaccgcgacagccaggcg
ctgctcgccacgctgtgccacccagaggccagcccggagcagcaggacgccgcacgcgcc
cagctgcgcgatgcactgctcgaccgccacggcaccggccgcgtgatgttccgcaacagc
cgccgtcacgtaggtggcttccccgagcgacgcctgcatttagctccgctcgaactgccg
tcggcctaccgccgcgtgctgcgccgcctggagcgcgacgacgactatttggacgagctg
ctgatcgaaaccggcatggaccatccggacgtactgatctacccggacgccatgtaccgc
gagctcagcaacgacccgctgaacaccgaggcctggtggcacatcgaccctcgcgtcaac
tggctgctcgaaaaactcagcgacgacagcgagacgggcttcgccaacgacaaagtactg
gtcattgcccaccaccgggaaaccgcagaagggctcgcggagggcctgcgggtcttgggc
ggctaccatgcgccggtcttccacgaaggcctatcgctggtcgagcgcgaccgggccgcc
gccgcgtttgccgacgaagaggatggctgccaggtgttggtgtgttccgagatcggctcc
gaggggcgcaactttcagttctgccgccacttggtcatgttcgacatgccgcagcacccc
gaccagctagagcagcgcattggccgtcttgaccggatcggccagcgccacgccatcgag
ctgcacgtgcctacgtttaccggcagccccggcgagcgcctgctgcgctggtaccacgaa
ggcatggacgcgttcagcgcgccccatggggtgggcagcgacctgttcgatgcctttggc
gatgctctggccgatgcgctgctcgacgacgagatgctcgacgagatcatcgacgagacc
cgagagatgttcatcgccaagctcgccgaacgggatgcaggccgcaaccgcctgctggaa
ctcaacgcctgccgccccacgcgggcacggcaggtgatcgatgccgtgcgcgagctggac
gaggatccggcgctgcctcgctacgtggagcgtgcgctggatatcttcggggtcgacagc
caggagatcggcaacggtctgctgcaccttcagcccagtcagcacatgctggatggcctg
cccgggttggtcaaaggcgaagagggcttctctgccacttacagtcgcgcccaggcacta
gcgcgggatgacgtgcagcggctctcttgggagcatccgctggtgcgcgaaatgatgggc
cgcgtgctcgacggcaccatgggcaacaccgcactagcactgctgcgtcatccggcgatt
cccagcgggcgcttgatggccgagctggtcttccgcacccactgtccggcgcccaaatcg
ctgcacctgaaccgcttcttgccgcccaccgccgtacgcgtactgctggatgagtcaggc
gccaacctgaccagcaagatctcgttcaccgggctgggcaaaaacctgcagaaggtgaac
aagtcgctggcgcgggatttgatcaagagccgccatgatcagcttcgcgagctgctcacc
caaggagaaagcgaagccgagcgtgaactgccgagtatcgtagaggccgcagaaatccgc
atgcgcgcccagctagacgccgagctggcccgcctgacggcgctggcggagcacaatccg
gcggtgcgtagtgaagagctggaagcgctgcagcaggagcgtcaggcgctgagcagcgct
atcgaaaacactcgcctacgactcgactcggtgcgggtgatcatcaccgtcgaccccaac
gcgaactaa
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