Halomonas sp. A020: HaloA020_13560
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Entry
HaloA020_13560 CDS
T10931
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
haaz Halomonas sp. A020
Pathway
haaz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
haaz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HaloA020_13560 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haaz03021
]
HaloA020_13560 (rpoB)
03400 DNA repair and recombination proteins [BR:
haaz03400
]
HaloA020_13560 (rpoB)
Enzymes [BR:
haaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HaloA020_13560 (rpoB)
Transcription machinery [BR:
haaz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HaloA020_13560 (rpoB)
DNA repair and recombination proteins [BR:
haaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HaloA020_13560 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
DUF8806
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
BCB60655
LinkDB
All DBs
Position
1482699..1486775
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYYDFLQQDRSPDERHEVGLHAAFKSV
FPIESFSGNAALEYVSYRFGTPAFDVKECQLRGVTYSAPLRVKVRLIIYDRDSSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYSARV
IPYRGSWLDFEFDPKDNVFVRIDRRRKLPASVLMRALGMSTEEILDEFFETSKFHIEKSG
FSVELVPSRLRGETATFDIKDGEGGVIVEEGRRITQKHIRQLEKAGLERLEVPMEYLFGK
TLAKDQIDTKTGELICPCNTEITPEVLERMAQGGITHIETLYTNDLDCGSFISDTLKLDT
TGSQLEALVEIYRMMRPGEPPTKEAAETLFHNLFFTEDRYDLSGVGRMKFNRRLRRESDT
GSGVLDRKDILDVLRELINIRNGFGDVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLATYSHTNSYGFLETPYRKVV
NSQVTDDVVHLSAIEEGDFVIAQASAAVDESGKLSDDLVQVRHRGETTFMRPEQVTLMDV
SPRQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERFVARDSGVC
AVARRGGVIDSVDARRVVVRVNEDEIIGGEAGVDIYNLTKYTRSNQNTCMNQRPIVRPGD
NVARGDILADGPSVDMGDLALGQNMRIAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQE
LTCVSRDTKLGPEEITSDIPNVGESALGKLDEAGVVYIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRAPTGMKGTVIDVQVFTRDGVEKDSRALSIEQMQLDE
VRKDLQETYRIAEDATFERLKRTLAGQAVNGGPQLKKGDVLDDAYLDELPRQQWFKLRMQ
DESYNELLAQADEQLENRRKEMDERFEDKKRKLTQGDDLAPGVLKIVKVYMAVKRRIQPG
DKMAGRHGNKGVISAIMPIEDMPFDEKGEPVDVVLNPLGVPSRMNVGQILETHLGMAARG
LGVKIDAMLRDARGQQVAEIRDFLGQVYNTPGTRVEDIDSLTDDEVIALAKNLKGGVPMA
TPVFDGAKEHEIKHLLKLADIPESGQMTLYDGRTGDAFDRPVTVGYMYMLKLNHLVDDKM
HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTK
MYKNIVDGDHTMQAGMPESFNVLVKEIRSLGIDIELES
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgcatccgcaaggatttcggcaaactgccccaa
gtgatggatgtgccttacttgctggccatccagcttgattcctactacgactttctccag
caggatcgttcgcccgacgagcgccacgaggttggcctgcacgcggcgttcaagtccgtg
ttcccgatcgagagcttctcaggcaatgcggccctggagtacgtgagctaccgtttcggt
acgccagcgttcgatgtcaaagagtgtcagctgcgtggcgtgacctattccgctccgctg
cgtgtcaaggttcgcttgatcatctacgatcgcgactcttcgaacaaggccatcaaagac
atcaaagagcaggaagtctacatgggggagatccccctgatgaccgagaacggtaccttc
gtcatcaacggtactgagcgggttatcgtttctcagctccaccgttcgcccggtgtgttc
ttcgatcacgacaaaggcaagagccactcctcagggaagttgctctactctgctcgcgtg
attccttaccgtggctcttggctcgacttcgagttcgacccgaaagacaacgtcttcgta
cgtatcgaccgccgccgcaaactgccggcctcggtattgatgcgtgcgctgggcatgagc
accgaagagatcctcgacgaattcttcgaaaccagcaagttccacatcgagaagagcggt
ttctcggtggagctggtaccgtcacgtctgcgcggtgaaacggccacgttcgacatcaaa
gatggcgaaggcggcgtcatcgtcgaagagggccgtcggatcactcagaagcacattcgt
cagcttgaaaaagccggccttgagcgtctggaagtgccgatggagtacctgttcggcaaa
acgctggccaaagaccaaatcgataccaaaaccggtgagctgatctgcccgtgtaacacg
gaaatcactccggaagtcctcgagcgtatggcgcagggcggtatcacgcatatcgaaacc
ctctacaccaacgacctcgactgcggttcgttcatttccgacactctgaagctggatacc
accggctctcagttggaagcgctggtcgagatttaccgcatgatgcgccccggcgagccg
cccaccaaagaggctgccgagacgctgttccacaacctgttcttcaccgaagaccgctac
gacctgtcgggcgttggccggatgaagttcaaccgtcgcctgcgccgtgaatccgacacg
ggctctggcgtattggatcgtaaagacatcctcgatgtcctgcgtgagctgatcaatatc
cgtaacggcttcggcgacgtggacgatatcgatcacctgggtaaccgtcgtattcgctgc
gtgggcgaaatggccgagaaccagttccgcgtcggtctggtgcgcgtcgagcgtgcggtg
aaagagcgcctttccatggcggaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccggttgcggcggcggtgaaagagttcttcggctccagtcagctgtctcagttcatg
gaccagaacaacccgctctccgaggtgacccacaagcgtcgtgtgtcggcactcggcccg
ggtggtctaacccgtgagcgtgcaggcttcgaagtgcgcgacgtacacgccacgcactat
ggccgtctgtgcccgatcgagacgccggaaggcccgaacattggtctgatcaactcgctg
gcgacgtacagccacaccaatagctacggcttcctggagacgccttaccgtaaggtcgtc
aatagccaggtgaccgatgacgtggtgcatctctctgccatcgaggagggcgatttcgtt
atcgcccaggcctctgctgccgtagatgagtctggcaagctgagcgatgacttggtgcag
gtacgtcaccgtggcgagacgaccttcatgcgtcctgaacaggtgacgctgatggacgtg
tctccgcgtcaggtcgtctccgtggccgctgcgctgatcccgttcctcgagcacgatgat
gccaaccgcgccttgatgggggcgaacatgcagcgtcaggccgttccgaccctgcgcgcc
gacaagccgctagtaggtactggcatggagcgcttcgtggcccgtgactccggcgtgtgt
gccgtggcacgccgcggcggcgtcattgactccgtcgacgcgcgtcgtgtcgtggtgcgg
gtcaacgaagacgagatcatcggcggtgaagccggtgtcgacatctacaacctgaccaag
tacacccgttccaaccagaacacctgcatgaaccagcgccccatcgtgcgccctggtgac
aacgtggcgcgtggtgacatcctcgccgacggtccgtccgtcgacatgggtgacctcgcg
cttggccagaacatgcgcatcgccttcatgccctggaacggctacaacttcgaggactcc
atcctcctgtccgagcgtgtggttcaagaagaccgtttcaccacgatccacatccaggag
ctgacctgtgtgtcccgcgacaccaagttggggccggaagagatcacctccgatattccc
aacgtcggtgaatcggcgctgggtaaattggacgaagcgggcgttgtttacatcggtgcc
gaagtcggccccggcgatattctggtcggtaaggtcacgcccaaaggcgaaacccagctg
acgcccgaagagaagctgctgcgcgccatcttcggtgagaaggcgtctgacgtaaaagat
acctctctgcgtgctcccaccggcatgaaagggacggtcatcgacgttcaggtcttcacc
cgtgacggcgtcgaaaaagactcccgtgcactctccatcgagcagatgcagctggacgaa
gtgcgtaaggatcttcaagagacctaccgcatcgccgaagatgccacctttgagcgtctg
aagcgtacgctggcaggtcaggccgtcaacggcggtccgcagctgaagaaaggcgacgtg
ctggacgacgcgtatctggacgaactgccccgtcagcagtggttcaagctgcgtatgcag
gacgagtcctacaacgaactgctggcccaggccgacgagcagctcgaaaaccgtcggaaa
gagatggacgagcgtttcgaagacaagaagcgcaagttgacccagggcgatgacctcgcg
ccgggcgtgctgaagatcgtcaaggtctatatggcggtcaagcgtcgtattcagcccggt
gacaagatggccggtcgccacggtaacaaaggtgttatctctgcgatcatgcccatcgaa
gacatgccgttcgacgagaagggcgagccggtggacgtggtactgaacccgctgggtgta
ccgtcgcgtatgaacgtcggtcagattttggaaacccacctgggtatggcggcacgcggc
ttgggtgtcaaaatcgacgccatgctgcgcgacgcccgcggtcagcaagtcgctgaaatt
cgtgacttcctgggtcaggtgtataacacgccgggtacccgcgtcgaggatatcgactcc
ttgaccgatgacgaagtcatcgcgctggcgaagaacctaaagggcggtgtgccgatggcc
acgccggtgttcgacggtgccaaagagcacgaaatcaagcacctgctgaagctggcggac
attccggagtcgggccaaatgacgctgtacgatggccgtaccggcgatgcgtttgaccgt
ccggtgaccgttggctacatgtacatgctgaagctcaaccacttggtagacgacaagatg
cacgcgcgttctaccggttcttactcgcttgttacgcagcagccgctgggtggtaaggcg
cagttcggtggtcagcgctttggtgagatggaagtgtgggcgctggaagcctatggcgcc
gcgtacacgctgcaagagatgctcaccgtcaagtcggacgacgtcgaaggccgcaccaag
atgtacaagaacatcgtggatggcgaccacaccatgcaggcaggcatgccggaatccttc
aacgtactcgtgaaggaaatccgctcgctgggcatcgatatcgagttagagagctag
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