Halomonas sp. A020: HaloA020_15250
Help
Entry
HaloA020_15250 CDS
T10931
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
haaz Halomonas sp. A020
Pathway
haaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HaloA020_15250 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haaz03019
]
HaloA020_15250 (pnp)
03016 Transfer RNA biogenesis [BR:
haaz03016
]
HaloA020_15250 (pnp)
Enzymes [BR:
haaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HaloA020_15250 (pnp)
Messenger RNA biogenesis [BR:
haaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HaloA020_15250 (pnp)
Transfer RNA biogenesis [BR:
haaz03016
]
Prokaryotic type
tRNA degradation factors
HaloA020_15250 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
KH-I_KHDC4-BBP
S1_2
OB_RRP5_4th
CC_BshC
Caskin-Pro-rich
Motif
Other DBs
NCBI-ProteinID:
BCB60824
LinkDB
All DBs
Position
1644169..1646334
Genome browser
AA seq
721 aa
AA seq
DB search
MLKEVAVNPVKKTFQYGRSTVTLETGRIARQATGAVMVTMDDTVVLCTVVAKKDVNPGQP
FFPLSVHYQEKTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIC
TVLSTDRNHDPDIAAMLGTSAALSISGVPFNGPIGAARVGFNEEQGYFLNPTVEELTTSE
LDMVVAGTENAVLMVESEAQELLEDEMLGAVLFGHQEMQVAIDAIKELTAEAGKPRWEWQ
APAENVALKTAMADAFEAKVGEAYRITDKMQRQDALAALKDAAVEQLAAAEGEEEAEGKF
SKDDVKGAFAALEKRVVRSRVVKGEPRIDGRDNVTVRPLNIDVGVLPKTHGSAIFTRGET
QAIAVATLGTLRDSQLIESLEGERKDRFMLHYNFPPYSVGEAGFMGGPKRREIGHGRLAR
RGVQAMLPSEEEFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGL
VKDEDGYAVLTDILGDEDHLGDMDFKVAGSEEGVTALQMDIKIEGINEEIMETALQQAHD
ARIGILAQMNAVISQSRNEVSENAPSMATIKIDPDKIRDVIGKGGATIRKICEDTGASID
LDDDGTVRIYAEDKAAAKKAIDTVLAITAEAEIGKLYKGKVVRIADFGAFVNIMPGTDGL
VHISQIVQERVNNVRDFLNEGDDVIVKVLDIDNRNRVKLSIKEITEEEKAAFEAAEADVA
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaggaagtagccgtgaatccggtcaaaaaaacgttccaatacggtcgcagcacc
gtcaccctcgaaactgggcgtatcgctcgccaagccactggtgccgtgatggtcaccatg
gacgacaccgtcgtcctgtgtacggtggtggcgaagaaagacgtcaacccaggccagccc
ttctttccgctctcggtacactaccaagagaaaacctacgccgtgggtaaaatccccggt
ggcttcttcaagcgtgaaggccgcccgacggagaaagagaccctcacgtcgcgtttgatc
gaccgcccgattcgcccgctgtttccgaaaggcttcatgaacgaagtgcaggtgatctgt
accgttctatccaccgaccgtaatcacgatccggacatcgcggccatgctcggcacctcg
gcggcgctgagcatctcaggcgttccgttcaatggcccgattggtgccgcccgtgttggc
ttcaacgaagagcaaggctacttcctgaatcccaccgtcgaagagctgaccacctccgag
ctggacatggtggtggccggtaccgaaaacgccgtgctgatggtggagtccgaagcgcaa
gaactgctcgaagacgaaatgctgggtgccgtactgtttggccaccaggagatgcaggtc
gcgatcgacgccatcaaagagctgaccgctgaagccggtaagccgcgctgggagtggcag
gcgccggcagaaaacgttgccttgaaaacggccatggccgacgcctttgaagccaaagtg
ggtgaggcgtaccgcatcaccgataaaatgcagcgccaagatgcactcgcagcgctgaaa
gacgcggccgtcgaacagttagcggccgcggaaggcgaagaggaagcggaaggcaagttc
agcaaggatgacgtgaaaggcgcgttcgcagcgcttgagaagcgtgtggtgcgctcccgc
gtggtcaagggcgagccgcgcatcgatggccgcgacaacgttaccgtgcgtccgctgaac
atcgacgtcggcgtgctgccgaaaactcacggctcggccatcttcacccgtggtgagacc
caggccattgcggtcgcaacactcggcacgctgcgtgattcgcagctcatcgagtcgctg
gaaggcgagcgtaaagaccgcttcatgctgcactacaacttccctccctactcggtgggt
gaagctggcttcatgggtggcccaaagcgccgtgaaatcggccacggccgtttggcgcgt
cgcggtgtccaagcgatgctgccgtctgaagaagagttcccctacaccatccgtgtggtg
tcggaaatcaccgaatccaatggctctagctccatggcgtccgtgtgcggctcctcgctg
gcgttgatggatgcgggcgttccgctgaaagccccggtggcgggtattgccatgggcctc
gtcaaagacgaagacggctacgcggtgctgaccgatatcctgggtgacgaagaccacctg
ggtgacatggacttcaaagtggccggttctgaagagggcgtcactgccctgcagatggac
atcaagatcgagggcatcaacgaagagatcatggagactgcgctgcaacaggcccacgat
gcgcgcatcggtatcctggcgcagatgaacgccgtgatcagccaaagccgtaacgaggtg
tcggaaaacgccccctccatggcgacgatcaaaatcgatccggacaagattcgcgacgtc
atcggcaagggcggcgccaccattcgcaagatttgcgaagacaccggtgcatcgatcgat
cttgatgacgatggcaccgttcgcatctacgccgaagacaaagccgctgccaagaaagcg
atcgataccgtactggcgatcaccgccgaagcggaaatcggcaagctgtacaaaggcaag
gtcgtacgtatcgccgactttggtgcgttcgtgaacatcatgccgggaaccgatggcctg
gtgcacatctcgcaaatcgtccaggagcgcgtcaataacgtgcgcgacttcctgaacgaa
ggcgacgatgtcatcgtgaaggtgttggatatcgacaaccgcaaccgcgtgaagctctcg
atcaaagagatcaccgaagaagagaaagcagcgtttgaagctgccgaggcggacgtcgct
agctaa
DBGET
integrated database retrieval system
