Halomonas sp. A020: HaloA020_16420
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Entry
HaloA020_16420 CDS
T10931
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
haaz Halomonas sp. A020
Pathway
haaz03030
DNA replication
haaz03430
Mismatch repair
haaz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
haaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HaloA020_16420 (dnaE)
03430 Mismatch repair
HaloA020_16420 (dnaE)
03440 Homologous recombination
HaloA020_16420 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haaz03032
]
HaloA020_16420 (dnaE)
03400 DNA repair and recombination proteins [BR:
haaz03400
]
HaloA020_16420 (dnaE)
Enzymes [BR:
haaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HaloA020_16420 (dnaE)
DNA replication proteins [BR:
haaz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HaloA020_16420 (dnaE)
DNA repair and recombination proteins [BR:
haaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HaloA020_16420 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
BCB60941
LinkDB
All DBs
Position
1764432..1767935
Genome browser
AA seq
1167 aa
AA seq
DB search
MTVPFVHLRLHSEYSLVDGLVKLKSLVSTTAERGMPALALTDEANLFGLVKFYKAAQGAG
LKPIIGSDLWLSNPHDDAHPYRITLLAMNDVGYRNLTELISKGWTDGQRQGRAILDKQWV
LAQSEGLIALSGGREGEIGRHLLSEHEREARQLLEEWQQAFPDRFYLELIRTGRPLEEAC
VHASVQLAIETGTPVVATNDVRFLEREDFWAHETRVAIGEGKALDDPRRERRYTEEQYLK
SPDEMAALFADIPEALENSVMIAERCSVDVRLGEIFLPEFGIPEGMTQDEFFRKVSHDGL
TERLDFLFPAEQYPRDSDAFREIDQRYRDRLEFELNVIIQMGFPGYFLIVMDFIQWAKDN
NVPVGPGRGSGAGSLVAYAQKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEKRDKV
IEYVADRYGRNAVSQIVTFGTMAAKAVVRDVARAQGKPYSLGDKLSKLIPFEVGMTLAKA
IEQEPALKEFIENDEEAEEIWEMALKLEGTTRGTGKHAGGVVIAPTKLTDFSPLLCDEDG
AGLVVQFDKNDIEDAGLVKFDFLGLRTLTIIDWALEMVDKVRDANGQGPLNIDAIPLDDG
KTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINR
KHGRAEVSYPHPDYQHDLLKPVLTPTYGIILYQEQVMQIAQVMAGYTLGQADMLRRAMGK
KKPEEMAKQRAGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWL
KAHYPGPFMAAVMSTEMDNLDKVVPLIEECRHLKLTVTPPDVNVGGYKFTVDTDGRVVYG
LGAIRGVGEGPIGAIVEARNADGPFKDLFDFCRRIDPKRMNKRTLEALIRSGALDNLGPN
RAVLFAAMEDALKAAAQNHANQNLGMMDMFGDAFVAEEEASDVYAEYRHVREWTDRERLS
GEKDTLGLYLTGHPIDEYERELKRFVSTRISDLKPSREPQRVAGLVVAMRTMKSKRGDTM
AFITLDDRTGRIEASLFGELFEQLRGQIESDQVIIVEGEVSSDDFSGGLRLRGKDVTPMV
TARVRYGQAVELALDAGQINGRLVESLRDSLTPFRDDTGLPVRLQYRHPDATAWLELAEE
WKVAPSDDLLLALRDVQGQVGVQLRYR
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgacggttccgttcgttcatcttcgtttgcacagtgaatactctctggtcgatggcttg
gtcaaactcaagtcactggtcagtacgaccgctgagcgcgggatgccggcgctggcgctc
accgacgaagccaacctgtttggtttggtcaaattctacaaagccgctcagggcgccggg
ttgaagccgatcattggcagcgatctctggctctcgaatccccacgacgatgcccacccg
taccgcatcacgctgctagcgatgaacgatgtgggctatcgaaacctgaccgagctgatc
tccaagggctggaccgatggccagcgccaggggcgggcaatcctcgataaacagtgggta
ttggcgcagagcgaaggtctgattgccctgtcgggcgggcgcgaaggcgagattggccgc
catctgctctccgagcacgagcgggaagcgcgccagctgctggaagagtggcagcaggcg
tttcccgaccgcttctacctggagctcatccgcaccggccgccctctggaagaggcctgc
gtacacgctagcgttcagttggcgatcgagaccggcacgccggtcgtcgccaccaacgac
gtgcgctttctagagcgtgaggatttctgggcccacgaaacccgcgtcgccattggtgag
ggtaaagccctggacgacccgcgccgcgaacgccgctataccgaagagcagtacctcaaa
agccccgacgagatggcggcgctgtttgccgatatccccgaggcgctggaaaacagcgtg
atgatcgccgagcgctgcagcgtcgatgtgcgtctgggagagatcttcctgccggaattc
ggcattcccgaaggcatgacccaggatgagttctttcgcaaggtctcccacgatggccta
acggagcggctcgattttctgtttcccgccgagcagtacccgagagacagtgacgcgttt
cgcgagatcgaccagcgctaccgtgaccgactggagttcgagctcaacgtcatcattcag
atggggttccctggctacttcctgatcgtgatggactttatccagtgggccaaggacaac
aatgtgccggtaggcccggggcgcggctccggtgcggggtctctggtggcctatgcgcaa
aaaatcaccgacctggaccccatcggctacgatctgctgttcgagcgctttcttaaccct
gagcgtgtctccatgcccgacttcgacgtcgatttctgcatggagaagcgcgacaaagtc
atcgagtacgtggctgaccgctatggccgtaacgcggtctcccagatcgtcaccttcggc
accatggccgccaaagccgtggtgcgcgacgtggcccgcgcccagggcaagccctactcg
ctgggcgacaagctctccaagctgatcccgttcgaagtgggcatgacgctggccaaggcc
atcgagcaggagcccgcgctcaaagagttcatcgagaacgacgaagaggccgaagagatc
tgggaaatggccctgaaactcgagggcaccacgcggggtaccggtaaacacgcagggggg
gtggtgatcgctcccaccaaactcaccgacttttcgccgctgctatgcgatgaagacggc
gcgggcttggtggtgcagttcgataagaacgatatcgaagacgccgggctggtcaaattc
gacttcctgggcttgcgtaccctcaccatcatcgattgggcgcttgagatggtggataag
gtgcgtgacgctaacggccaggggccgctcaatatcgacgccattcccctggacgacggc
aaaaccttcgagatgctcaagcgggcagaaaccacggcggtcttccagttggaatcccgc
ggtatgaaggagctaatcaagcgcctgctgcccgactccctggacgatatgatcgccttg
gtagccctgttccgccccggtccattgcagtcgggcatggtggatgacttcatcaaccgg
aaacatggccgggcggaagtctcttatccacacccggattatcagcacgacctgttgaaa
ccggtgttgacgcctacctacggcatcattctctaccaagagcaggtcatgcagatcgcc
caggtcatggcagggtacacccttgggcaggccgacatgctgcgccgtgccatgggtaag
aaaaagcccgaagagatggccaagcagcgggcaggtttcatggaagggtgtgccgccaac
ggcatcgacaaagacttggcgggcaatatcttcgacttggtggagaagtttgccggttac
ggtttcaacaagtcgcactcggcggcctacgcgctggtgtcttatcaaaccgcatggctc
aaagctcactacccagggcccttcatggcggcggtgatgtccaccgagatggacaacctg
gacaaagtggtgccgctgatcgaagagtgtcgtcacttgaagctgacggtgacgccaccg
gatgtcaacgtcggtggctacaagttcaccgtggataccgacgggcgggtggtgtacggc
ttgggcgcgatacgtggcgtcggagaaggcccgattggcgcgattgtggaagcgcgaaac
gcggacggaccgttcaaggatctgttcgacttctgccgccgcatcgatccgaaacggatg
aacaagcgtaccctggaagcgctgatacgctctggcgcgttggataacctggggcctaac
cgggcggtgctgttcgcggcgatggaagacgcactgaaggcggcagcgcaaaatcacgcc
aaccagaacctgggcatgatggacatgtttggcgatgccttcgtcgccgaagaagaggcc
agcgatgtttacgccgagtatcgtcatgtgcgcgaatggacggaccgtgagcggctctct
ggtgaaaaagacaccctggggctctacctgaccgggcaccccatcgacgagtacgaacgc
gaactcaagcgcttcgtgtcgacgcgtatcagcgatttgaaaccctctcgggaaccgcag
cgggtagcgggtttggtggtcgccatgcgcaccatgaagtccaaacgtggcgataccatg
gcattcatcaccctggacgaccgcaccggacgtatcgaagcgtcgctgtttggcgaactt
ttcgagcagctacgcggccaaatcgagtcggatcaagtgatcatcgtggagggcgaagtc
tccagcgacgacttttccggtggcctacggctgcgcggcaaagatgtgacgccgatggtc
acggcccgcgtgcgctacggccaagccgtcgagctggcgctggatgccggacagatcaat
ggccgattggtcgagagcctgcgagatagcttgaccccttttcgggatgacaccggactc
cccgtgcggttgcagtaccgccatccagacgcgaccgcttggctggagctggccgaggag
tggaaggttgcgccgagcgatgatctgctgcttgcgctgcgtgatgtgcaagggcaggta
ggcgtccagttacgctaccgttaa
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