Halomonas sp. A020: HaloA020_16470
Help
Entry
HaloA020_16470 CDS
T10931
Symbol
rho_1
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
haaz Halomonas sp. A020
Pathway
haaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HaloA020_16470 (rho_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haaz03021
]
HaloA020_16470 (rho_1)
03019 Messenger RNA biogenesis [BR:
haaz03019
]
HaloA020_16470 (rho_1)
Transcription machinery [BR:
haaz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HaloA020_16470 (rho_1)
Messenger RNA biogenesis [BR:
haaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HaloA020_16470 (rho_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_25
NACHT
AAA_22
AAA
Fungal_virus_P2_C
Motif
Other DBs
NCBI-ProteinID:
BCB60946
LinkDB
All DBs
Position
1772333..1773592
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKTVPELLDIAREMGIDNLARSRKQDIIFAILKKHAKSGEDIYGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDSISGKIRPPKEGERYFALLKVSQIN
FDRPENAKHKILFENLTPLFPNDRLRMEIGNGSTEDLTARIIDLTAPIGKGQRGLLVSPP
KAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEAHLDRKLAEKRVFPAINI
RRSGTRREDLLASEDEMQRMWILRKLLNPMEDTAATEFLIDRLKDTKTNLEFFEAMKRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcactgaactcaagcaaaaaaccgttcccgagctgctcgatatcgcccgtgaa
atgggcatcgacaacctggcccgttcgcgcaaacaggacatcattttcgccatcctcaag
aagcatgccaaaagcggcgaggatatttatggcgacggtgtgctggaaattcttcaggat
ggcttcggcttcctgcgtagtgccgacagttcgtacctcgccggaccggacgatatctac
gtatcgccttcacagattcgtcgtttcaatctgcgcaagggcgactccatttccggcaaa
attcgtccgcccaaagagggcgagcgctattttgcgctgctcaaagtcagccagatcaac
tttgatcgtccggaaaatgccaagcacaagattctcttcgagaacctgacgccgctgttt
ccgaacgaccgtctgcgtatggagatcggcaacgggtcgaccgaagatctgaccgcccgg
atcatcgatctgaccgcgcccatcggtaaaggtcagcgcggcctgctggtgtctcccccg
aaagcgggtaagacactgatgctgcagaacatcgcgacctcgatcacgcgcaataacccc
gagtgtcatctgatcgtgctactgatcgacgagcgcccggaggaagtcaccgagatgtcc
cgcaccgtgcgcggtgaagtggtcgcctccaccttcgatgagccgcctgcccgccacgta
caggtagccgaaatggtcatcgaaaaagccaagcgcttggttgagcacaagaaagacgtg
gtgatcctgctcgactccatcactcgcttggcgcgtgcttacaacaccgtcgtacccagc
tctggcaaggtgctcaccggtggtgtggatgcccatgcactcgagaagccgaaacgcttc
tttggggcggcgcgtaatatcgaagagggcggcagcctgacgatcatcgccaccgcgctg
gtcgataccggctcgaaaatggacgaagtcatcttcgaagagttcaagggcaccggtaac
atggaagcgcaccttgaccgcaaactggcggagaagcgtgtcttcccggcgatcaacatt
cgccgcagcggcactcgccgtgaggatctattggcctctgaagatgaaatgcagcgtatg
tggatcctacgaaaactgctcaacccgatggaagataccgcggccaccgagttcttgatc
gatcgtctgaaagacaccaagaccaatctcgaattcttcgaagccatgaaacgccgttaa
DBGET
integrated database retrieval system
