Halomonas sp. A020: HaloA020_24580
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Entry
HaloA020_24580 CDS
T10931
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
haaz Halomonas sp. A020
Brite
Enzymes [BR:
haaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HaloA020_24580
Messenger RNA biogenesis [BR:
haaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HaloA020_24580
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Ortholog
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GFIT
Other DBs
NCBI-ProteinID:
BCB61757
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Position
2659083..2663084
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AA seq
1333 aa
AA seq
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MTTDTHSSRIDILQDNASSLATLKASLDHVMRRDQERLSRRVAGLRRRQRENKPIDRGLN
EVEREVDQAKQLLAQRESLRVTLDYPAELPVVERREDILAAIRDHQVVVVAGETGSGKTT
QLPKMCLELGRGRKGLIGHTQPRRLAARSVAGRLAEELSVPLGEQVGYQVRFNDQSSPST
LVKLMTDGILLAETQHDPLLLRYDTLIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVIIT
SATIDVERFAAHFGTPETPAPVVEVSGRTFPVDVHYRPLARSDEDEEDRTLQEGIVHAVR
EIETIEREKGWLHGPRDVLVFLPGEREIRETADTLRRADLKGTEILPLYARLSNEEQNRV
FAPHRGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRAKIQRLPIEPVSQASANQ
RKGRCGRIAEGVCIRLYDEEDFLSRPAFTDPEIQRTNLASVILSMLALKLGSIEDFPFVD
PPDSRFVKDGFRLLFELGAVNEKQQLSTLGRKLAKLPIDPRLARMVLAGAERGCLRDVLI
VVSALAIQDPRDRPADKRQAADQAHQRWHDPDSDFVALLNLWHGIDNARDALSGNQLRRW
CREHYINYLRMREWHDTFRQLRQLLRDMDIEVPAPLPRDENESEEQAKQARRKTSGKLHQ
ALLSGLLSHLGTLLENREYLGARNRKFMIHPGSGLAKKTPKWVMAFELIETTKLFARTVA
KIDPQWIEPQAEHLVKRSYSEPHWEMKRAQVVAFEQVTLFGLPIVARRRVHYGPIAPQES
RELFIRRALVEGEFQTKGAFFAHNRALIDEVEALEDRARRRDILVDEETLFAFYDERIPA
DVVNGKGFEHWRKQAERQDPELLKFDIDALKARDAHDVTLAQYPDHLTLSGVAYPVSYHF
DPDAADDGVTLTVPAAMLPQLPVHALEWLVPGLLREKCIALLKSLPKSIRRQVVPIPDWV
DAALETLAPDERPLTEALGEFIRRRTGTRVHPDDWRLDLLPPHLIMNVRVVDHAGDMLGQ
GRDVRALEKRFEEAASAGAQALADQASQAPSMDELPQTPLPESRVTTQAGIRVEAYPALV
ANGHHFNVSLFDHPAKATAAHQEGVARLAIAKQPEQVKAIKRLPGVEKCALLFAKVGTKQ
VLVDDLLLAVFTQVVATHPLPRSAPELAERLNRTGESLIPYAVTLLERVENALKGHLAVT
KVLKGKLNFALALVYSDVSAQMQRLVYPGFIRDAGEWLDEYPRYTEAALIRLEKAARERG
RDQMMMQDVQALEERFDARRKSERRGNAEDPALVVFGWWLQELRVSLFAQQLGTKMPVSV
KRLEKRWEEITHP
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccgacacgcactcatcccgtatcgacatcctgcaagacaacgcttcctcacta
gcaacgctcaaggcgtcgctagatcacgtcatgcggcgtgatcaggagcggctctcgcgt
cgggtggcgggcctacggcggcggcagcgagagaacaaaccgatcgaccgcggtttgaac
gaggtggagcgggaggtcgaccaagccaagcaattgctggcccagcgggaaagcctccgc
gtgacgctggattacccggcagagctgccggtggtagagcgccgtgaggatattctcgcc
gcgatccgtgaccatcaagtggtggtcgtggccggggagacggggtcgggtaaaaccact
cagttacctaaaatgtgtctggagctgggtcgtggccgtaaagggttgattggccatact
cagccacggcgtctggcggcgcgcagcgtcgcggggcgtctggcggaggagttgagcgta
ccactaggcgagcaagtaggctatcaggtccgtttcaacgaccaaagctcaccgagcacg
ctcgtcaagctgatgaccgacggaatcctgctggccgagactcaacacgatcctctgctg
ctccgttacgacacgctgatcattgacgaagcccacgagcgcagcctgaacatcgatttc
ttgcttggctacctcaaacggttgctgcctaagcgtcctgatctgaaagtcatcatcacc
tcggccacaatcgatgtggagcgttttgcggcgcatttcggcacgcctgaaacgccagcg
ccggtggtcgaggtgtcgggccgaacgttcccggtagacgtgcattaccgtccgttggcg
cgcagcgatgaggatgaagaggaccgcacactgcaagaaggcatcgttcacgccgtgcga
gaaatcgaaacgatcgaacgagaaaaaggctggctgcatggcccccgggacgtactggtg
tttttacccggcgagcgggagatccgtgaaactgccgatacgttgcgccgtgctgacttg
aaaggcaccgagattttgccgctgtacgcgcgcctctccaacgaagagcagaatcgggtg
tttgctcctcaccggggacggcggatcgtactggcgacgaacgtggccgaaacctcactc
accgtgccggggatacgctacgtcattgacccgggccttgtgcgcatcagccgttacagc
taccgggcaaaaattcagcgactgcccatcgagccagtcagccaggccagcgccaatcag
cgcaagggccgctgcggccggatcgccgaaggcgtctgtattcgtctttacgacgaagag
gattttctgtctcggcccgcgttcaccgacccggagatccagcgtaccaacctggcgtcg
gtcattttgtcgatgctggcactcaagctaggcagtatcgaagacttccccttcgtcgac
ccgcccgatagtcgcttcgtcaaagatggctttaggctgcttttcgagctcggtgccgtc
aacgagaagcagcaactgagcacactgggccgtaagctggcgaagctgcccatcgaccct
cgcttggcccgtatggtgttggctggtgcagagcggggctgcctgcgtgacgtactgatt
gtcgtatcggcgctggcgattcaagacccccgcgatcggcccgccgacaagcgccaagcc
gccgaccaggcgcatcagcgctggcacgatccggattccgacttcgtggcgttgttgaac
ttgtggcatggcattgataacgcccgcgatgcgctatccggcaaccagctgcgccgctgg
tgtcgcgagcactacatcaactacctgcgcatgcgcgagtggcacgatacgtttcgccag
ctacgccagctgttgcgggatatggatatcgaggtgcccgcaccgctaccccgtgatgag
aacgaaagcgaagagcaggccaagcaagccagacggaaaacgtccggtaagctgcatcag
gcgttactatcgggtctgctctcccatttgggcacgttacttgaaaaccgcgagtacctc
ggcgcgcgaaaccgcaagttcatgattcatccaggctcagggctggccaagaaaaccccc
aaatgggtcatggccttcgagttgatcgaaaccaccaagctgtttgcccgcaccgtcgcc
aaaatcgacccccaatggatcgaaccgcaggcggaacacttggtgaaacgcagctacagt
gagcctcactgggagatgaagcgtgcccaggtggtcgccttcgagcaggtcactctgttt
ggcctacctatcgtagcgcgccgtcgtgttcattatgggcccattgcgccacaggagtcg
cgggagctgttcatccgccgggcgctagtggaaggcgagtttcaaaccaaaggggcgttc
ttcgcccataatcgtgcgctaatcgatgaagtcgaagcgctagaagatcgcgcccgtcgg
cgggatattctcgttgacgaagagacgctctttgccttctacgacgagcgcatacccgca
gatgtcgtcaatggcaagggcttcgagcactggcgtaagcaggccgagcgtcaggaccct
gagctgctcaagttcgatatcgatgctctcaaggcccgggatgcccatgacgtcactctg
gcgcagtatccagatcatttaacgctgtctggcgtcgcgtacccggtcagttaccacttc
gacccggatgccgccgacgatggcgtgaccctaaccgtgcctgcggccatgctaccgcag
ttgcccgttcatgcccttgagtggttggtgccggggcttctacgcgagaagtgtattgcg
cttttgaaatcgctgccgaaaagcattcgtcgtcaggtagtgcccattcctgactgggtc
gatgctgcattggagacgctagcgcccgatgagcggccgcttaccgaagcgttgggtgag
ttcattcgccgacgtaccggcacccgtgttcatccagacgattggcgtctcgatttgcta
cccccgcacctgatcatgaacgtgcgagtggtcgatcatgcgggtgacatgcttggccag
gggcgcgacgtgagggcactagagaagcgtttcgaagaggcggctagtgcaggggcccag
gcgttggccgatcaggcaagccaagcgccttcgatggacgaactacctcagacaccgctg
cccgagtcgcgtgtgaccacgcaagcgggcattcgtgtagaagcctatccagcgctggtc
gccaatgggcatcatttcaacgtcagcctgttcgatcaccctgcgaaagccactgcggcc
caccaagagggcgttgcccggttagccatcgcaaagcagcccgagcaagtgaaagcgatc
aaacgcttgcctggggtggaaaagtgcgcgctgctatttgctaaagtaggcactaagcag
gtgctcgtggacgacttgctgctagcagtgtttacccaggtggtggcgacacatccgctg
ccgcgctctgcccctgagctcgccgagcgtctcaataggaccggcgaatcgctgattccc
tatgcggtaacgcttttggagcgggttgaaaacgccttgaaagggcatttagccgtcacc
aaggtgcttaaagggaagctcaattttgcgctagcgctcgtttacagtgatgtgagcgca
cagatgcagcggttggtctatcctggcttcattcgcgatgctggggagtggctcgatgag
tatccacgctataccgaagccgcgttgattcgccttgaaaaggcggcccgcgaacgaggt
cgtgatcaaatgatgatgcaggatgtccaggcgctcgaagaacgcttcgacgcgcgacgc
aaaagcgagcgacgcggtaacgctgaagacccggcactcgtggtattcggctggtggctc
caggagctgcgtgtttctctgtttgcgcagcagctcggaacaaaaatgccggtgtcagta
aagcgcctggaaaaacgctgggaagagatcacgcatccctaa
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