Halomonas sp. A020: HaloA020_27860
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Entry
HaloA020_27860 CDS
T10931
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
haaz Halomonas sp. A020
Brite
KEGG Orthology (KO) [BR:
haaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haaz03019
]
HaloA020_27860 (hrpB)
Enzymes [BR:
haaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HaloA020_27860 (hrpB)
Messenger RNA biogenesis [BR:
haaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HaloA020_27860 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
AAA_25
ResIII
Cas3-like_C_2
Flavi_DEAD
AAA_30
nSTAND3
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BCB62085
LinkDB
All DBs
Position
3032087..3034531
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AA seq
814 aa
AA seq
DB search
MSTSLPIEQHLNQIRSVLASQNRLILVAQPGAGKTTRVPLTLLSCAWAQGQKLLLLEPRR
VAAKLAATFMAAQLNEQVGETVGYRMRGDSQTGRKTRLEVVTQGVLIRMLQDDPLLEGVA
GIIFDEFHERSLEADLGLALALDVQESVRDDLRLLVMSATLDVTALKRVLGSDIAVIESE
GRAFPVETHYRPPLGEASLSDTALRVLHEALIRPESQDVLIILPGVADIAQLVDAVEESP
LDVEVHPLHGRLPLELQQAAMRPRAERRRVIVSTAIAESSVTIDGVNVVIDAGFERVPLF
NPSTGLTKLTTRRVNKASADQRRGRAGRQQPGVCYRLWAAEQPLVGYAEPEILQADLSNL
VLETALWGVHEPRALSWVTSPPEGALRSAQALLDQLRLRAPGGGLTQLGRQSAALALEPR
LAAMLVGAKALQAIPLACALAALMEGRERVQGSLRDALTQRLQKPSAFSQWHQQTQRLAR
SMDVSMPRVVDLGALSALLCLAYPDRVAQRIGIGRFKLANGKTATLPERHPFAQHDWLVA
VAIESATSEARIYVAEPITITTLVQLYPDTGRWEECVGWSEEQGKLVGEAVQRHGELVLA
VRPLPQLSAEAMEKALLEALKQRPQLVITEDVRQLQGRMALLSRLWPEQWPDWSEAVLMG
TLETWLAPYVAGLTRMAQVERLPFHSCLMNTLAWEQQQQLERLVPSVITAPSGRAINVDY
APCQVEQAPVLALKLQEAFGWQSTPTVVDGRVSIILHLLSPARRPLQVTQDLKSFWINGY
PEVRKEMRGRYPKHPWPEDPLTAQATASTKRRHE
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatcgcttcctattgagcagcatctgaatcaaattcgttccgtgctggcgagc
caaaaccgtctgatactcgtagcgcagccaggagccggtaaaaccacgcgcgtaccgcta
acgctgctgtcgtgtgcgtgggcgcaggggcagaaactgctactgctggagccgcgtcgg
gttgccgccaaactcgccgccaccttcatggcggcccagctcaatgagcaagtgggtgag
accgttgggtatcggatgcggggcgacagccaaactggccgtaaaacccggctggaggtg
gtcacgcagggcgtgcttattcgtatgctgcaggatgacccgttattagagggcgtagcg
ggaatcatttttgacgagtttcacgagcgaagccttgaggcagatttaggcctcgctctg
gcgctcgatgtgcaagagagcgtgcgtgacgacctgcgtctattggtaatgtcggccacc
ttggatgtgacagcgctcaagcgagtgttagggagtgatatagcggtcatcgaaagcgag
gggcgagccttccccgtcgagacccactatcgaccgccgttgggggaagcttcgctgagc
gacaccgcgctgcgagtgcttcatgaggccctgatacgtccagagagccaagacgttctg
ataatcttacccggcgtagccgacatcgctcaactcgttgacgccgtggaagagagccct
ctggatgtcgaggtgcacccgctgcatggaaggttgcctttggagttacagcaggcggcc
atgcggccacgtgcagagcgtcggcgggtgatcgtctcgaccgcgattgccgagtccagt
gtgacgatcgacggtgtcaacgtcgtgatcgatgcaggattcgagcgggtgcctctgttc
aatcctagtacggggctgaccaaactaaccacccgtcgtgtcaacaaggcgagtgccgat
cagcgtcgtgggcgtgccggtcgccagcagccgggcgtctgctatcggctttgggctgcg
gaacagcccctggtgggctatgcggaaccggagatacttcaggccgatttatccaacctc
gtgctagaaaccgccctatggggtgtccatgaacccagagctttgtcgtgggtcacatcg
cctcctgagggggcgctgagatcggctcaggcgcttctggatcagcttcgcttacgagcg
ccaggcgggggattgacgcagctcggtcggcagagtgcggcgctagccttggagccgcgt
ttagccgccatgctagtgggggcgaaagctttgcaggcgatacctctggcctgtgcactg
gcagcattgatggagggccgagagcgggtgcaagggtcgctgcgtgatgcgctgacccag
cgattgcaaaagccttctgctttttcgcaatggcatcagcagacccagcgcctagcgagg
tcgatggacgtctccatgcctcgtgtcgttgatctaggggcgctcagcgctctgctgtgt
ttggcatacccagaccgtgtcgcccagcgcatcggcattgggcgcttcaaactggcgaat
ggcaaaacggcaacgctgcctgagcgtcatccatttgcccaacacgactggctagtggcg
gtagcgatcgagagtgcaaccagtgaagcccgcatttacgtcgcagaacccatcacgata
accactttggtccagctctatcctgataccggacgttgggaagaatgcgtgggctggtcg
gaggagcagggtaagctggtcggcgaggccgtacagcggcacggcgagctggtgttagcc
gttcgtccgttgccccagctgtcggcagaggcgatggaaaaagcgctcctagaggcgctc
aagcaacgcccgcagctagtgataacggaggacgttcgccaattgcaggggcgaatggcg
ttgctctcacgactatggccggagcagtggcccgattggtcggaggcggtgctaatgggg
acgttggagacgtggctggcgccctatgtcgcggggttgacgcgcatggcgcaggtcgaa
aggttgccatttcatagctgcctcatgaatacactggcgtgggagcaacagcagcaattg
gagcgcttggtgccaagcgtgatcacggcgccgagcggtcgcgccatcaacgtggattac
gcgccgtgccaagtggagcaggcgccagtattggcattgaagctacaagaggcttttggt
tggcaatcaacgcctaccgtcgtcgatgggcgtgtatcgataatacttcatttgctgtcg
cctgcgcggcgcccgcttcaagtgactcaagatttaaagagcttttggatcaatggttac
cctgaggtacgcaaagagatgcggggtcgctatcccaaacacccgtggccagaagatccg
ctaacggctcaagccacggcgtctaccaaacgacggcacgaatga
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