Haloarcula sp. CBA1115: SG26_02980
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Entry
SG26_02980 CDS
T03645
Name
(GenBank) CdcH
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hab
Haloarcula sp. CBA1115
Pathway
hab04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
SG26_02980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hab03019
]
SG26_02980
03009 Ribosome biogenesis [BR:
hab03009
]
SG26_02980
04131 Membrane trafficking [BR:
hab04131
]
SG26_02980
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hab04147
]
SG26_02980
Messenger RNA biogenesis [BR:
hab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
SG26_02980
Ribosome biogenesis [BR:
hab03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
SG26_02980
Membrane trafficking [BR:
hab04131
]
SNARE
SNARE associated proteins
Others
SG26_02980
Autophagy
Aggrephagy
Other aggrephagy associated proteins
SG26_02980
Exosome [BR:
hab04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SG26_02980
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
CDC48_2
RuvB_N
AAA_16
AAA_5
AAA_22
TIP49
AAA_2
AAA_33
AAA_14
nSTAND3
NPHP3_N
RNA_helicase
AAA_28
AAA_7
Mg_chelatase
IstB_IS21
NB-ARC
AAA_18
ABC_tran
Sigma54_activat
AAA_3
AAA_17
Parvo_NS1
TsaE
AAA_30
DUF815
nSTAND_NTPase5
ATPase
AAA_11
AAA_24
PhoH
AAA_lid_PRS2_C
SLFN-g3_helicase
NACHT
Vps4_C
Motif
Other DBs
NCBI-ProteinID:
AJF24749
LinkDB
All DBs
Position
complement(626557..628782)
Genome browser
AA seq
741 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGSDTTAAKVWRADRQDWN
TDTVRIDGFTRQNADVGIGERVTIRKAEAEKADKLVLAPPEEASVQFGSDAAGMVKRQIL
KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVETEPEGVCLITEDTEVELREEPISGFE
KTGGGITYEDIGGLQNEIQRVREMVELPMKHPQIFKKLGIEPPQGVLLHGPPGTGKTLLA
KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEESPSIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLESRGQVIVIAATNRVDSVDPALRRPGRFDREIEIGVPDEV
GREEILQIHTRGMPLSDDVNLAKLATDTHGFVGADIESLTKEAAMKALRRYLPEIDLDEE
DIPPSLIDRMIIKRDDFKGALNEVSPSAMREVLVELPKMSWDNVGGLSGPKEQVQEAVEW
PMNSPEKFERMGVTPPSGVLLYGPPGTGKTLMAKAVANETDANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVAPTIIFFDELDSLAPGRGGEMGSNVSERVVNQLLTELDGLEEMEDV
MVIGATNRPDMIDPALIRSGRFDRLVMIGEPDVEGREQILKIHTDDTPLSPDVSLRELAE
VSDGFVGSDLESIAREAAIEALREDDDAEEVEMRHFRQAMDSVRPTITDDIREYYEQMEE
EFRGGSSPQRQAGTGGRIGFQ
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagttcaattggaagtggcgaaggcgtacccgaacgactcgggacgcggtatc
gccagactcgaccccgatacgttgttgcatctcaagctctcccccggagacatcatcgag
atagaggggagcgacacgaccgcggccaaggtgtggcgggccgaccggcaggactggaac
actgacactgttcgcatcgacggcttcacgcgccagaatgctgacgtgggtattggtgag
cgcgtcacaatccggaaggccgaggccgagaaggccgacaagctcgttctcgcgccgccc
gaggaagcgtcggtccagttcggctccgacgccgctggcatggttaagcggcagatattg
aaacggccggtcgtcgagcgcgacatcgtcccggtgatgtcctcgacgaaccacccgttc
atgcgctcgcccggacaggccatcccgctcatcgccgtcgagaccgagcccgagggcgtc
tgtctcatcaccgaagacaccgaggtggaactccgcgaggaaccgatctccggcttcgag
aagaccggcggcggcatcacctacgaggatatcggcgggctgcaaaacgagatccagcgg
gtgcgagagatggtcgagttgccgatgaaacacccccagatcttcaagaagctcggcatc
gagccgccacagggggtcctgctccacggcccgcccggcaccgggaagacgctgcttgcg
aaggccgtcgccaatgaaacctctgccagtttcttctctatcgccggccccgagataatc
tcgaagtactacggggaaagcgaacagcagttacgcgagatattcgaggacgcgagcgag
gaatcgccctcgatcatcttcatcgacgagctggactccatcgcgcccaagcgtgaggac
gtgaccggcgaggtcgagcgccgggtcgtcgcccagctgctgacgatgatggacggcctc
gaatcgcgggggcaggtcatcgtcatcgccgcgacgaaccgcgtcgacagcgtggacccg
gcgctgcgtcgcccgggccgcttcgaccgcgagatcgagatcggcgtcccggacgaagtc
ggtcgcgaggagatcctccagattcacacccgcggcatgccgctgtcggacgacgtgaat
ctggcgaagctggcgacggacacgcacggcttcgtcggagccgacatcgagagtctcacg
aaggaggccgcgatgaaggcgctccggcgctaccttcccgagatcgatctggacgaggag
gacatcccgccgagcctcatcgaccggatgatcatcaagcgggacgacttcaagggcgca
ctcaacgaggtgagtccgtcggcgatgcgggaggtgctggtcgagctcccgaagatgtcc
tgggacaacgtcggcggcctcagcggccccaaagagcaggtccaggaggccgtcgagtgg
ccgatgaactccccggagaagttcgagcgcatgggcgtgacgccgccctcgggggtgttg
ctgtacggcccgcccggcaccggaaagacactcatggcgaaagccgtcgccaacgagacc
gacgcgaactttatctcagtccgtggcccgcaactgctctcgaagtgggtcggcgagagc
gagaaggccatccggcagacgttccggaaggcccgccaggtcgccccgaccatcatcttc
ttcgacgaactcgactcgctggcaccgggtcggggcggcgagatggggtcgaacgtctcc
gagcgcgtcgtcaatcagctcctgaccgaactcgacgggctcgaagagatggaggacgtg
atggtcatcggcgcgaccaaccggccggacatgatcgacccggcgctcatccgctcgggc
cggttcgaccgcctggtgatgatcggcgagcccgacgtcgagggccgcgagcaaatcctg
aaaattcacacggacgacacgccgctgtcgcccgacgtgagcctgcgcgaactggccgaa
gtcagcgacgggttcgtcgggtcggacctcgaatccatcgcccgcgaagccgccatcgag
gcgctccgcgaggacgacgacgcggaggaagtcgagatgcgtcacttccggcaggcgatg
gacagcgtgcggccaaccatcaccgacgacatccgggagtactacgagcagatggaagag
gagttcagaggcggttccagtccgcagcgccaggccgggaccggcggccggatcggcttc
cagtaa
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