Haloarcula sp. CBA1115: SG26_15150
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Entry
SG26_15150 CDS
T03645
Name
(GenBank) 2'-5' RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hab
Haloarcula sp. CBA1115
Brite
KEGG Orthology (KO) [BR:
hab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hab03016
]
SG26_15150
Enzymes [BR:
hab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SG26_15150
Transfer RNA biogenesis [BR:
hab03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SG26_15150
Prokaryotic type
tRNA splicing ligases
SG26_15150
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RtcB
MgtE_N
Motif
Other DBs
NCBI-ProteinID:
AJF26973
LinkDB
All DBs
Position
complement(3024503..3025966)
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AA seq
487 aa
AA seq
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MVLELTGEHTTARVMVDDESLVEAGCREQIETLIDHPAFTEPVRIMPDTHWGAGAPIGFT
MPLGDRVVPNIVGVDVGCGMAATNLGPELPLEDEERERRVREAVPMGRSVHDYDDAVHFV
EEFPFERANRIFEQFDAAYAERFGEHIDPVEFDFDGYDEEYFESLCDRVLADQRQGMGYI
IKSAGTLGGGNHFVEFGRAHESGDYWLVIHSGSRYLGKSVAEYWQSTATDRRTIGEIREQ
IPDEYVEYLKFDPDTVESRDLYAWVTGGMGESYIRKDRLRRELDGKEIEDAFDALGQVQD
AIHSSDDEDRNTDLDWLEGREAHGYLVDMLFAQQYARWNRELMSDAVCDALGIDPVDRFQ
SIHNYIDFRDLTIRKGATPAREGQRLLVPFNMADGSIIARGRGNDEYHQTAPHGAGRVMS
RRQAHSEVDMDEFAAAMDGIYSESVIKGVRDEAPMAYKNADAILSAIQPTAEVVEYVDAV
HNLKATE
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggtactcgaactgacgggcgaacacaccacagcgcgggtgatggttgacgacgaatcg
ctcgtcgaggctgggtgtcgggagcagatagagacgctcatcgaccatcctgcgttcacc
gaaccggtgcggatcatgccggacacgcactggggggccggcgcacccatcggcttcacg
atgccgcttggcgaccgcgtcgtcccgaacatcgtcggcgtcgacgtcggctgtgggatg
gccgcgacgaacctcgggccggagctcccgctggaagacgaagagcgcgagcgccgcgtc
cgcgaggcggtcccgatggggcggtcggttcacgactacgacgacgcggtccatttcgtc
gaggagttcccgttcgagcgggccaaccgcatcttcgagcagttcgacgcggcctacgcc
gagcggttcggcgagcacatcgaccctgtagagttcgatttcgacggctacgacgaggag
tacttcgagtcgctgtgtgaccgcgtgctggccgaccagcgccagggaatggggtacata
atcaagagtgcggggacgctgggcggcgggaaccacttcgtcgagttcggccgggcacac
gagtcgggcgactactggctggtcatccacagcgggtcccggtatctgggtaagtctgtc
gccgagtactggcagtcgacggcgacggaccgtcggaccatcggcgagatccgcgagcag
atccccgacgagtacgtcgagtatctcaagttcgaccccgatacagtcgaatcgcgggac
ctctacgcctgggtcaccggcggcatgggcgagtcctacatccggaaggaccgcctccgg
cgcgaactcgacggcaaggaaatcgaggacgccttcgacgcgctgggacaggtccaggac
gccatccacagcagcgacgacgaggaccgcaacacggacttagactggctcgaaggccgc
gaggctcacggctacctcgtcgacatgctgttcgcccagcagtacgcccgctggaaccgc
gaactgatgagtgacgccgtctgcgacgcgctggggatcgaccccgtcgaccgcttccag
tcgattcacaactatatcgatttcagggacctgaccatccgaaagggggcgaccccggcc
cgcgagggacagcggctgctggtcccgttcaacatggccgacgggtcgattatcgcacgc
gggaggggcaacgacgagtaccaccagacagcgccgcacggcgcgggtcgcgtgatgagt
cgccgacaggcccacagcgaggtcgacatggacgagttcgccgcagcgatggacggtatc
tactcggagtccgtcatcaaaggcgtccgggacgaagcgccgatggcgtacaagaacgcc
gacgcgatactctcggctatccagcccactgccgaggtcgtcgagtacgtcgacgccgtc
cataatctgaaggcgactgagtga
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