Halomonas sp. BDJS001: OM794_01950
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Entry
OM794_01950 CDS
T10426
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
habd Halomonas sp. BDJS001
Pathway
habd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
habd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OM794_01950 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
habd03019
]
OM794_01950 (pnp)
03016 Transfer RNA biogenesis [BR:
habd03016
]
OM794_01950 (pnp)
Enzymes [BR:
habd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
OM794_01950 (pnp)
Messenger RNA biogenesis [BR:
habd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OM794_01950 (pnp)
Transfer RNA biogenesis [BR:
habd03016
]
Prokaryotic type
tRNA degradation factors
OM794_01950 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
KH-I_KHDC4-BBP
S1_2
KH_Mug60-KHD4
Motif
Other DBs
NCBI-ProteinID:
UZH10550
LinkDB
All DBs
Position
373730..375898
Genome browser
AA seq
722 aa
AA seq
DB search
MLKEVAVNPVKKTFQYGRSTVTLETGRIARQATGAVMVTMDDTVVLCTVVARKEANPSQP
FFPLSVHYQEKTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVVC
TVLSTDRNHDPDIAALLGTSAALSISGVPFSGPIGAARVGFNEDKGYFLNPTVEELATSE
LDMVVAGTEKAVLMVESEAKELLEDEMLGAVLFAHEEMQVAITAINELVAEAGKPRWEWQ
AAEENQALKAAMADAFEAKVGDAYRITDKMQRQDALAELKEQAIELLAADEGEPVNDKFS
RDEVKGAFAGLEKRVVRSRVIKGEPRIDGRDNQTVRPLAIEVGVLPKAHGSAIFTRGETQ
AIAVATLGTLRDSQLIESLEGERKDRFMLHYNFPPFSVGEAGFIGGPKRREIGHGRLARR
GVQAMLPSEEAFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLV
KDDDGFAVLTDILGDEDHLGDMDFKVAGSEEGITALQMDIKIEGINEEIMELALQQALTA
RLSILEQMNVVISQSRSDVSDNAPSMATIKIDPDKIRDVIGKGGATIRKICEDTGASIDL
DDDGTVRIYAEDKAAAKRAIDTVLAITAEAEIGKLYRGKVVRIADFGAFVNIMPGTDGLV
HISQIVAERVNNVRDFLNEGDEVIVKVLDIDNRNRVKLSMKEITEEEKAAFTAEAAETEA
TI
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaggaagtcgctgtgaatccggtaaagaaaacgttccagtacggtcgtagcacc
gtcacgctcgaaaccgggcgtattgctcgccaggccaccggcgctgtcatggttaccatg
gatgacaccgttgtactgtgtaccgtggttgctcgtaaagaggctaacccgagccaaccc
tttttccccctctcggtacactaccaagagaaaacctacgcagtgggcaagattcctggc
ggcttcttcaagcgcgaaggtcgtcccactgagaaagagacgctgacctcgcggctgatt
gatcgcccgattcgtccgctatttcccaaaggctttatgaacgaagtgcaggtcgtctgt
accgttctctccaccgaccgcaaccacgatccggatatcgctgctttgcttggcacctcg
gcggcgctgagcatctctggcgtgccgtttagtggcccgattggcgcagcccgcgttggt
tttaacgaagacaaaggctacttcctcaaccccacggttgaagaattggccacctctgag
ctggacatggtcgtcgccggtactgaaaaagccgtgctgatggttgagtctgaagctaaa
gagctgcttgaagacgaaatgctgggcgccgtactgttcgcgcacgaagagatgcaggtt
gccattacggcgatcaacgagctggttgccgaagcgggcaagccgcgctgggagtggcag
gctgccgaagagaaccaggcgctgaaagccgccatggccgatgcctttgaagcgaaagtg
ggcgatgcttaccgcatcaccgacaaaatgcagcgccaggatgcactggctgagctgaaa
gagcaggcgattgagctactggctgccgacgaaggcgagccggtgaatgacaaattcagt
cgcgacgaagtgaaaggtgcttttgcgggcctggagaaacgcgtggtgcgttcacgggtt
atcaaaggcgagccgcgtattgatggtcgtgacaaccagaccgttcgcccgctggccatc
gaagtcggtgtgctgcccaaagcccacggttccgccatctttacccgtggtgagacccaa
gcgattgccgtggcgacgctgggtaccctgcgtgattcccaactgatcgagtccctggaa
ggcgagcgtaaagaccgctttatgctgcactacaacttccctcccttctcagtaggcgaa
gcgggctttataggtggcccgaaacgtcgtgaaatcggtcatggtcgcttggcgcgtcgt
ggcgtccaggcgatgctgccatccgaagaagctttcccttacaccattcgtgtggtgtct
gaaattaccgagtccaatggctcaagctccatggcttctgtgtgcggctcttcgctggcc
ttgatggatgcaggcgtgccgttgaaagcaccggtcgccgggattgccatgggcctggtg
aaagacgatgacggttttgccgtcttgactgatatcctgggtgatgaagatcaccttggc
gatatggactttaaagtcgctggttctgaagagggcattaccgccctgcagatggatatc
aagatcgaaggcatcaatgaagagattatggagctcgcgctgcagcaagcactgactgcg
cgactgagtattctcgagcagatgaatgtcgttatcagccagagccgtagcgatgtctcc
gacaacgcgccgtccatggcaacgatcaaaatcgatccggacaagatccgtgacgttatc
ggtaaaggtggcgcaaccattcgcaaaatctgcgaagacaccggcgcctctattgatctc
gacgacgatggcaccgtgcgtatttacgcggaagataaagccgccgccaagcgcgccatc
gacaccgtactggcgattaccgctgaagcggaaatcggcaagctgtataggggcaaggtc
gtgcgtattgccgattttggtgccttcgttaatatcatgccgggtaccgatggcctggtg
cacatctcgcaaatcgttgccgaacgcgttaacaacgtgcgcgacttcttgaacgaaggc
gatgaagtgatcgttaaggttctggatatcgacaaccgcaaccgcgttaagctgtcgatg
aaagagatcaccgaagaagagaaagccgcttttaccgcggaagcagcggaaaccgaagcg
acgatttaa
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