Halomonas sp. BDJS001: OM794_05115
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Entry
OM794_05115 CDS
T10426
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
habd Halomonas sp. BDJS001
Pathway
habd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
habd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OM794_05115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
habd03019
]
OM794_05115
03009 Ribosome biogenesis [BR:
habd03009
]
OM794_05115
Enzymes [BR:
habd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OM794_05115
Messenger RNA biogenesis [BR:
habd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OM794_05115
Ribosome biogenesis [BR:
habd03009
]
Prokaryotic type
rRNA helicases
OM794_05115
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DeaD_dimer
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UZH11142
LinkDB
All DBs
Position
1115620..1117335
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AA seq
571 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLSAVESQGYLVPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLELTRREPQVLVMAPTRELAQQVAASFSKYGQNLKGLEVATLCGGQEYRE
QLGALKRGAQVVVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPTEIERIVNRYLVNPVKVAIESSTTTGENIEQRIVRVDGGAKLEALS
RILEVEPVDGAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVSRITHVINYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREGRKV
GWMEQATGQKMTEMPLPDEAAIRAHRDDVFYQRVIASLTKGAEEQRALIERLIEEGHDPI
ELTCAFAAMARADEAPIGRLQPPRKEKPSRDGASGGKPGARRERTGAPSEGMTRYRVSVG
HKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPATILTKMARARVAGRP
LEISEDSAPAERAPRRRRDEGDAPVRRRERA
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcctcgccgagcttcggcgatctagctcttttgcctgccgtt
ctgtctgctgttgaatcacagggctacctcgttccctcgccgattcaggcgcaaaccatc
cctgcgctgcttgaaggccgcgatatgttgggccaggcccagacgggtaccggcaaaacc
gcagcgtttgcactgccgttactgtcacgtttagaactaactcgccgcgaaccgcaagtg
ttggtaatggcaccaacccgcgagcttgctcagcaagtagctgcctcgtttagtaagtat
ggccaaaacctcaaagggctcgaagttgcgaccctatgtggcggccaagagtaccgtgaa
cagctgggcgcccttaagcgaggcgcgcaagtggttgtgggtaccccaggccggattatc
gatcacctggatcgcggcagtttgaagcttgatggcctctccgccctggtgctggacgaa
gctgatgaaatgttgcgcatgggctttatcgacgacgtaaaacgcgtggtcgccgatacc
ccgaaagatgcccagcgtgtgttcttctcagcgacactgcccactgaaattgagcgcatc
gttaaccgctacctggttaacccggtaaaagtcgccattgagtctagcaccacgaccggc
gaaaacatcgaacagcgcattgtgcgcgtcgacggtggcgctaagctggaagccctgtcg
cgtattctcgaagttgagcctgtcgatggggccatcgtttttgtgcgcacccgtgcggct
tgtaccaccttggttgagcagctaactgcccgtggcgttaacgccgctggcttgtccggc
gacctcgaccagagcctgcgcgagcgtactattacgcgcttgaagcgtggcaaagtcgac
gtgctgatcgccactgacgtagcagcgcgtggtcttgacgtgtcgcgtattactcacgtt
atcaactacgatctgcctcaggatgcggaagcttacacgcaccgtatcggccgtactggt
cgtgcaggccgcagtggcatcgcaattacctttgctggcttccgtgaaggccgcaaagtg
ggctggatggagcaggcaaccggtcagaaaatgactgaaatgccgctacccgacgaagcc
gctatccgtgcccatcgcgatgacgtcttctaccagcgtgttattgcttccttaacgaag
ggcgctgaagagcagcgtgctctgatcgagcgtctcatcgaagagggccatgatccgatc
gagctgacctgtgcgtttgccgctatggcgcgtgctgacgaagcaccgattggtcgccta
cagccaccgcgcaaagagaagccctcgcgtgatggtgcgtctggcggtaagccgggggca
cgtcgcgaacgcactggtgcgccgtctgaaggcatgacgcgctaccgcgtatcggttggc
cataaagatggtgtcaaacctggccaactggtcggtgctctcgctaacgaaggcggcatt
gaaggcgcacgtatcggtcgtatcgatattcgcaatgctttctctgtggtcgagctgccg
agtggcttgcccgcaacgattctgaccaagatggcccgtgcccgtgtggccggtcgcccg
ctggaaatcagtgaagacagcgcaccggctgagcgcgctccgcgccgtcgtcgtgacgaa
ggcgatgcgccggttcgtcgtcgcgaacgcgcttaa
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