Halomonas sp. BDJS001: OM794_06085
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Entry
OM794_06085 CDS
T10426
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
habd Halomonas sp. BDJS001
Brite
KEGG Orthology (KO) [BR:
habd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
habd03016
]
OM794_06085
Enzymes [BR:
habd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OM794_06085
Transfer RNA biogenesis [BR:
habd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
OM794_06085
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF1822
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
UZH11318
LinkDB
All DBs
Position
complement(1318846..1320786)
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AA seq
646 aa
AA seq
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MLQNNAMLAQLKQQIRQTTPRAEGVIKATDKGFGFLETDDGESYFVPPPAMKQVIHGDRV
EGVIHENGDKKSIEPEKLIEAGLDRFVSRVQKREGRLSVVPDHPSIKNVIKARIKNSLDE
ESIADGDWVVARLVRHPLKADDRAFFAQIDELVAKSDDPAVPWRVTLARHALEQECPDAG
TDWPLIDEGLTREDLTSTPFFTIDGEKTRDMDDALHVSTRAEGGWRLSVAIADPTAYVEE
GHAADLEARTRAFTVYLPGQNVTMLPEQLADDLCSLWEGKERPALACTLDINADGSMGDY
RFFAANVKSHAKLVYDNVSDWIEGQGDWAPADEIAEQLTALRDLTEARTAWRNEHALVFK
DRPDYVFDLDPAGNVLAVRTEERRIANRMIEESMIVANACCADFLAKHIGHGIFNVHRAF
EPEKAEAAQEFLAGQEIIVEREALTELARYTELKRALESRDDAWLDARLRRFQGFTMMSA
QPGPHFGLGLAAYATWTSPIRKYGDMVNHRLIKRVLKGEQAPAEATQQLTEQLTERRRLN
RMAERDVKDWLYVRYLTPSAQNQDTFEAEIMAINRGGMRVRLLENGATAFVPAPLMHSDR
SKVVIDDKEGRIQIEGEERYKLGDPIRVALTEAREETRSLVARPVV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcttcagaacaacgccatgcttgcccagctcaagcaacagattcgtcaaaccaccccc
cgcgctgaaggggtgatcaaagccaccgacaaaggtttcggttttctcgaaaccgacgac
ggtgaatcctatttcgtgccgccgcccgccatgaagcaggtaattcacggtgatcgcgtg
gaaggcgtgattcacgagaacggtgacaaaaaatccattgagccggaaaagctgattgaa
gctgggctggatcggtttgtttcccgcgtgcagaaacgtgaaggccgcctgtccgtcgtg
cccgaccatccgtcgattaaaaatgttatcaaggcacggattaagaacagccttgatgaa
gagagcattgctgacggtgactgggtcgttgcgcgtttggtgcgccacccgctgaaagcc
gacgatcgcgctttctttgcccagattgatgaattggttgcgaaaagcgatgacccggca
gtaccgtggcgcgttacgctggctcgccatgcgctggagcaagagtgccccgatgcaggc
accgactggccgttaattgatgaaggcctaactcgcgaagacttaacgtccacgcccttc
ttcaccattgatggtgaaaagacccgcgatatggatgatgcgctgcacgtatctactcgt
gcggaaggcggctggcggttaagcgtggccattgccgaccccaccgcttacgtggaagag
ggccatgcggctgacttggaagctcgcacccgcgcctttaccgtttacctgcctggccaa
aacgtcacgatgctgccagagcagctagcggatgatctctgctcattgtgggaaggcaag
gagcgccctgcactagcctgtacgctggatattaatgccgacggcagcatgggtgattac
cgcttttttgcggcgaacgttaaatcccatgccaagctcgtttacgacaacgtctccgac
tggatcgaaggtcaaggcgactgggcacccgcggatgagatcgctgagcagctcaccgca
ctgcgcgatttgaccgaggcgcgtaccgcttggcgtaacgaacacgcgctggtgtttaaa
gaccgccccgactatgtgtttgaccttgatcccgctggcaacgtattggccgtgcgcacc
gaagagcgccgcattgccaaccgcatgatcgaagagtcgatgattgtggccaacgcatgc
tgtgcggatttcctggccaagcacatcggccacggtatctttaacgtgcaccgtgccttt
gagccggaaaaagccgaagccgcccaggagtttttggccgggcaagagatcatcgtcgag
cgcgaagcgctcaccgagctggcccgctacactgagctgaagcgtgcgctggaaagccgc
gatgacgcttggctggatgcgcgcctgcgccgtttccagggctttaccatgatgtccgca
cagcccggcccgcattttggtttaggcttggctgcctatgccacctggacgtcgccaatt
cgtaagtatggcgatatggtcaatcaccgcttgatcaagcgcgtgttgaaaggcgaacag
gcgcccgccgaggctacccagcagctcaccgagcagttgactgagcgtcgccgcctgaac
cgtatggccgaacgcgatgtgaaggattggctctacgtgcgttacctgacgccctccgcg
cagaaccaggacacctttgaggccgaaatcatggccatcaaccgtggcggcatgcgcgtt
cgtctgctggaaaacggcgcaacggcgtttgtgcccgcgcctttaatgcacagtgaccgc
agcaaagtggtgattgatgataaagagggccgtatccaaatcgaaggcgaagagcgttat
aagcttggcgatcctattcgggtagcactgaccgaagcccgcgaagagactcgttcgctg
gtggcacgtcccgtcgtctaa
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