Halomonas sp. BDJS001: OM794_08770
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Entry
OM794_08770 CDS
T10426
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
habd Halomonas sp. BDJS001
Pathway
habd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
habd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OM794_08770 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
habd03019
]
OM794_08770 (rhlB)
Enzymes [BR:
habd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OM794_08770 (rhlB)
Messenger RNA biogenesis [BR:
habd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OM794_08770 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Utp25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UZH11813
LinkDB
All DBs
Position
1931973..1933247
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AA seq
424 aa
AA seq
DB search
MSESEQTTAPAQNRKPKRRRRKPRRRQSSWDLRQFQVPAVAGKWRFHDFDLPLPLMRAIH
AQGFEYCTPIQAEALRQTLLGGDIVGKAQTGTGKTAAFLISVMAYFLEEPTPNGQKPGAP
RALIIAPTRELALQIEKDAKALARFTQLNVASVVGGMDYQKQRESLGSKIDILVATPGRL
LDFHQKRDIDLNEVEVLVLDEADRMLSMGFIPDVKRIIRYTPKKEERQTFLFSATFTDDI
LNLASQWTLNPAHVEIEVTVENQADIDQRVYLVSDDDKQRLLVNLLQQESFERVMVFGNR
RDLVRKLDDLLKKAGVSAAMLSGDVPQNQRIKTLESFREGEIQVLVATDVAGRGIHIEDV
SHVINYTLPEDPEDYVHRIGRTGRAGAKGVSISFVGEEDAFSLPEIERYINDKLPCVHPP
EGML
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtcggaacagaccacagcaccggcccagaaccgcaagccaaaacgtcgccgt
cgtaaaccgcgtcgtcgccagtcgagctgggatcttcgtcagtttcaggtgcccgccgtg
gcaggcaagtggcgctttcatgactttgatttgccgctgcccttaatgcgcgctattcat
gcccaggggtttgagtactgcacgcctattcaagccgaagccctgcgccaaacgctatta
ggtggcgacattgtcggcaaagcgcaaacgggaaccggtaaaaccgccgcctttttgatc
tcggtgatggcctactttctggaagagccaacacccaatggacaaaagcctggcgcgccg
cgtgccttgattattgctcctacccgcgagcttgcgctgcagatcgaaaaagatgccaaa
gcgttagcgcgcttcacgcagctcaatgtggcgagcgtggtcggcggtatggactaccag
aagcagcgtgaaagcctgggcagcaagatcgatattctggtggcaacgccagggcggctg
ttggatttccaccagaagcgcgatatcgacctcaatgaagtcgaagtattggtgctggat
gaagccgaccgtatgttgtcgatgggctttattcccgatgttaagcggattattcgctac
acgccgaaaaaagaggagcgtcagaccttcctcttctcggccacctttaccgacgacatc
ctgaaccttgccagccagtggacattaaatcctgcccacgttgagatcgaagtgaccgtt
gagaatcaggcggatatcgatcagcgtgtgtacctggtgtccgatgacgacaagcagcgc
ttgttggttaacctgctccaacaggagagcttcgaacgcgtgatggtgttcggtaaccgt
cgtgacttggtacgcaaacttgacgacctgttgaaaaaggccggtgtcagtgcggcgatg
ctgtcgggggatgtgccacagaatcagcgtatcaaaaccctggaaagcttccgcgaaggt
gagattcaggtattggtcgccactgacgttgctggccgtgggatccacattgaagacgtc
agccacgtcatcaattacaccctgcccgaagacccggaagattatgtacaccgtattggt
cgtaccggacgcgccggtgctaagggcgtgtcgattagcttcgttggcgaagaggatgct
ttctcattgccggaaatcgaacgctacatcaatgacaaactgccctgcgtacatccgccg
gaaggtatgctctaa
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