Halomonas sp. BDJS001: OM794_09705
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Entry
OM794_09705 CDS
T10426
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
habd Halomonas sp. BDJS001
Pathway
habd03030
DNA replication
habd03430
Mismatch repair
habd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
habd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OM794_09705
03430 Mismatch repair
OM794_09705
03440 Homologous recombination
OM794_09705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
habd03032
]
OM794_09705
03400 DNA repair and recombination proteins [BR:
habd03400
]
OM794_09705
Enzymes [BR:
habd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OM794_09705
DNA replication proteins [BR:
habd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OM794_09705
DNA repair and recombination proteins [BR:
habd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OM794_09705
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
PAS_4
Rv2179c-like
MASE1
PAS
Motif
Other DBs
NCBI-ProteinID:
UZH11986
LinkDB
All DBs
Position
complement(2130302..2132362)
Genome browser
AA seq
686 aa
AA seq
DB search
MTRGGLPKRQRLIGLWLLLSGISLLGGAIFAAWLDAQLAPTGITRLALWLGSFSGGATIF
LVGLVLERMLFTPLRHLQVQLARLVATPDARDEHPPEGWLKGLGPDLRRVRESWREDRSR
LATAHADGARSAARIRQELETLLQVLETPLLLCDHHRRLMLFNQAAEDFFAGNTGLGLGK
RLEALLPVASLQQVLSQLPHDGSPRELLAPCDDRWLKVILRRVPGSDGETLLTFSDATAS
WSSEMGVRAELAAMLTPLRQHTASLTSAADALIQLRDQNDASTSALRQRFERVIHEEGIT
LGDNVAKIGQLLDDMQHQGERLTPMWSNDFWQALDERLDPEHRLITPVGMPAWFKGDAPA
LIALFDSLVKHLNAHLPDSGFEGEICLGNKRVYLDLIWRGKAIPEYELAEWRQQPLTSLP
LTPSVADVMRQHASDIWSLADEDGVHSRLRLPLPAMERVGAPRETAPPRPEFHDFGIADL
PPPDEALASRTLRSLEIVAFDTETTGLELRRGDTVISLGACRVVNARLLASEVFDQKVDP
KRPIPPASTAIHGITDADVVGAPPLDIVLTRFRDYVGEAVLLAHNAAFDLLAISHKGVAF
DIPIIDTLLISRALDEALDGHDLDSLAQRYDLAFPPGTRHTALGDARVTAELWLALLPRL
EARGVDTLEQLLALQANAFDRQDASA
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgaggcgggttgcccaaacgtcagcgcctgattggcctctggctgctgctcagc
ggcatcagtttgctgggcggggccatttttgccgcctggttggacgcccagctcgccccc
actggtataacgcgtctggccctctggctaggcagcttctccggtggcgcaacaattttt
ttagtcggtttggtgcttgagcgcatgctgtttaccccgctgcgccatttacaggtgcaa
ctggcgcgcttagtcgccacccccgatgcccgggacgaacacccgcccgagggatggcta
aaaggattggggcccgacctgcgccgggtacgcgaaagctggcgcgaggatcgcagccgt
ctcgccaccgcccacgctgacggtgcgcgcagcgcggcgcgtattcgtcaggagctggaa
acgctgctgcaagtactcgaaacgccactgctactgtgtgaccaccaccgccgtcttatg
ctgtttaaccaggcggcagaggatttttttgcaggtaataccggcctagggctgggcaag
cgcctggaggcgctgctaccggtggcgagcttacagcaggtactcagccaactgccccac
gacggctccccgagggagttgttggcgccctgcgatgaccgctggctcaaggtaatctta
cgccgcgtaccgggtagcgatggcgaaacactgctgacctttagcgacgccaccgcttcc
tggtcgagtgaaatgggcgttagagcagaactggcggccatgctgacacccctgcgtcag
cataccgccagcctgaccagcgccgccgatgcgctgattcaactgcgcgatcaaaacgat
gccagcacgtctgctttgcgccaacgttttgagcgggttatccacgaagagggcatcacc
ctcggcgacaatgtggccaaaatcggccaactactcgacgatatgcagcaccagggcgag
cgcttaacccccatgtggtcaaacgacttctggcaggcgttggatgagcgcctcgatcca
gagcaccgcttgatcaccccggtgggtatgcccgcctggtttaaaggcgacgcaccggcg
ttgatagcgctgtttgactctttggtcaagcacctcaatgcccaccttcctgacagcggc
tttgagggtgagatatgcctgggcaacaagcgtgtctatctagaccttatttggcgcggc
aaagcgatccccgagtatgagctggctgagtggcgccagcagccgctcacctcgctgccg
ttgacgcccagtgtcgctgatgtaatgcgccaacatgccagcgatatctggagccttgcc
gacgaggatggcgttcattcacgcctacgacttcccctgcccgcgatggagcgagtcggc
gccccacgggagaccgcgccgccgcgccctgaattccatgactttggcattgccgaccta
cccccgccggatgaagcgctggccagccgaacgctgcgcagcctggaaatcgtcgccttt
gataccgaaaccaccgggcttgaactgcgccggggcgataccgtgattagccttggcgcc
tgccgcgtggtcaacgcccgcttattggccagcgaggttttcgatcaaaaagtggatccc
aagcgtccgatcccgcctgcaagcactgcgattcatggcattaccgatgccgatgtggtc
ggtgcgccgccgctggacattgtgcttacccgctttcgtgattatgtcggtgaagcggtg
ctgcttgcccataacgctgcctttgatctgctcgccatcagccacaaaggggtcgccttc
gatatccccatcatcgacaccctgctgatttcacgagcactggacgaagcactcgatggg
catgacctggatagccttgctcagcgctacgatctggcttttccgccgggcacccgccac
actgcattaggcgatgcccgcgtcactgccgagctatggctagccctgctgccacgcctg
gaagcccgtggggtcgatacacttgagcaactgctggcgctgcaagccaacgccttcgac
cgacaggatgccagtgcctaa
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