Halomonas sp. BDJS001: OM794_10765
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Entry
OM794_10765 CDS
T10426
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
habd Halomonas sp. BDJS001
Pathway
habd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
habd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OM794_10765 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
habd03400
]
OM794_10765 (uvrB)
DNA repair and recombination proteins [BR:
habd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OM794_10765 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OM794_10765 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
Kinesin
DUF87
UB2H
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
UZH12176
LinkDB
All DBs
Position
2345150..2347174
Genome browser
AA seq
674 aa
AA seq
DB search
MSKAFRLQSKFQPAGDQPAAIKGLISGLESGLAHQTLLGVTGSGKTFTMANVVEQQQRPT
IVMAPNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIE
QMRLSATKALLERRDALIVVSVSAIYGLGDPDQYLKMRLHFTRGELIDQRAFLRRLAELQ
YTRNDMDFRRGTYRVRGDVIDIFPADSDEEAVRVELFDSEIDTIRLFDPLTGAVHGEVPR
MTIYPKSHYVTPRETILGAIDAIKEELKERLEWMRKHERLVEAQRLEQRTLYDIEMMLEL
GYCNGIENYSRYLSGRAPGEPPPTFFDYLPDDALLFIDESHVSVPQVGGMYKGDRSRKET
LVEYGFRLPSALDNRPMKFEEWEAISPQTIFVSATPGRYEDEHASQTVEQVVRPTGLLDP
EIEVRPASTQVDDLLSEIGLRTAVGERVLVTTLTKRMAEDLTEYFDEHGIRVRYLHSDID
TVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGR
AARNAHGKAILYGDRITDSMRRAIDETERRRAKQTAHNEKHGITPTTVTRSVADILEAAQ
APGKKSSRRRDNERKVAESAAEYDVTTMSKQDLLGAISKLEDAMFEAAQNLEFEEAARLR
DQLHQMKEKQLALG
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagcctttcgattgcagtcaaaatttcagccagctggcgaccagccggccgcc
atcaaggggctgatcagtggcctggaatcagggcttgcccatcaaaccctgctgggggtc
actgggtcgggcaaaaccttcactatggccaacgtggtggagcagcagcagcgtcccacc
attgtgatggcgccaaacaaaacattagcggcccagctgtacggcgaattcaaagcgttt
ttcccggataacgccgtagagtacttcgtttcctactacgactactatcaaccagaagcc
tatgtaccttcttcagatacctttatcgagaaggatgcctcaataaacgaccatattgag
cagatgcgcctctccgccaccaaggcactgctggagcgccgcgacgcgttgatcgtggta
tcggtgtcggcgatttatggcttgggtgatcctgaccagtacctgaaaatgcgtttgcac
tttacccgcggcgagctcattgatcagcgcgctttcctgcgccgcttggccgaacttcag
tacacccgcaatgatatggattttcgtcgcggcacctaccgggtgcgtggtgatgtgatc
gatatcttccccgccgactctgacgaggaggcggtgcgggtggagctgttcgacagcgaa
atcgacaccattcgcctgtttgatccgctcactggtgccgttcacggtgaagtgccgcgg
atgaccatctaccccaaatctcactacgtgaccccgcgggaaacgattttgggcgccatt
gatgcgattaaagaggagctgaaagagcgtctggagtggatgcgcaagcatgaacgattg
gtggaggcacagcgccttgagcagcgcaccctttacgatattgagatgatgctggagttg
ggttactgcaacggtatcgaaaactactcccgctacctctctgggcgggcccccggagag
ccgccgccgacgttcttcgactatctgcccgatgacgcgttgctgtttatcgacgagtct
cacgtcagcgtgccccaggtaggcggcatgtataaaggcgatcgctcgcgtaaagagacc
ctggtcgagtatggcttccggctgccctctgcgctggataaccggcccatgaagtttgaa
gagtgggaggccatttctccgcaaaccatctttgtctccgccacccccggtcgctacgaa
gacgaacatgccagccagaccgttgagcaggtggtacgtcccaccgggctattggatccc
gaaattgaagtgcggccagccagcacccaggttgatgatctgctttcggaaattggtttg
cgcaccgccgttggcgagcgggtgctggtaaccacgctaaccaaacgtatggcggaagac
ctgaccgaatattttgatgagcacggcattcgggttcgctacttacactcggatatcgac
accgtcgagcgggtggagattattcgtgatctgcggctgggcaagtttgatgtgttggta
ggtatcaacctgctgcgcgaaggcctggatattcccgaggtgtcgctggtggcgattctg
gatgcggacaaagagggctttctgcgtgcggagcgctcgctgatccagaccattggccgc
gcggcccgtaacgcccatggtaaggcgattctctacggtgatcggattactgactcgatg
cgcagggcgattgatgagaccgagcgacgccgcgccaagcagaccgctcataacgagaag
catggcattacgccaaccaccgtgacacgctcggtggccgatatacttgaagccgcccag
gcaccaggtaagaagagcagtcgtcgacgtgacaacgagcgtaaagtggcggagagcgct
gccgagtacgatgtcaccaccatgagcaagcaagatctgctgggggccattagcaaactc
gaagacgccatgtttgaagcagcgcaaaacctggagtttgaagaggcggcgcggcttcgc
gatcagctccatcaaatgaaagaaaaacagctggcgctgggctag
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