Halomonas sp. BDJS001: OM794_11855
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Entry
OM794_11855 CDS
T10426
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
habd Halomonas sp. BDJS001
Pathway
habd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
habd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OM794_11855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
habd03019
]
OM794_11855
Enzymes [BR:
habd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OM794_11855
Messenger RNA biogenesis [BR:
habd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OM794_11855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
P-loop_SecA
Gag_p24
HI1480
AAA_22
COMPASS-Shg1
HEM4
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
UZH08106
UniProt:
A0A9E8D1R7
LinkDB
All DBs
Position
2563678..2564934
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AA seq
418 aa
AA seq
DB search
MSFSELGLHADLLRAVTAQGYTEPTPIQRQAIPVVLEGRDMLASAQTGTGKTAGFTLPML
QRLSSGKRPGKRQVRALVLTPTRELAAQVGESVSTYGQHLALRSHIIFGGVGQQPQIDAL
KAGLDVLVATPGRLLDLHQQGHVDLSCVEILVLDEADRMLDMGFIHDIKRLLRLVPKKRQ
NLLFSATFSNEIQTLAQQLLDNPAMIEVAPRNATADKIEQAIYRVDREKKRELLAHLIQQ
NGWFQVLVFTRTKHGANRLAEQLSKQDIPSMAIHGNKSQGARTRALTAFKSGDLQVLVAT
DIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSNGEAVSLVCVDEDALLGNIER
LIKQTLPKHIEPGFEPDPSIKPEPIENGRRNQRQPRAKRKPEGQSANTGGERKRRARR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgagcttttctgaacttggcctgcacgccgatctgttacgcgctgtcacagcgcaaggt
tacaccgagcccaccccgatacaacgacaggctattcccgtcgtactagagggtcgtgac
atgctggccagcgcccaaaccggcacgggtaaaaccgctggtttcacgctgccaatgctg
caacgcttaagctctggcaagcggcctgggaaacgtcaggtacgcgcactggtactaacc
cccacccgtgagcttgccgctcaagtcggcgaaagcgtatcgacctatggacaacacttg
gctctgcgctcccatattatttttggcggcgtcggccaacagcctcaaatcgatgcacta
aaagcgggtttggatgtacttgttgccacccctggacgcctgctggatctccatcagcag
ggacatgtggatctctcctgcgtcgagattttagtgcttgatgaagctgaccgtatgctg
gatatgggcttcattcacgatattaaacgcttgctgcgcctagtgcctaaaaagcgccaa
aacctgctgttttcggcgacattctctaacgagatccagaccctggcacaacagttgctg
gataacccggcgatgattgaagtcgcgccgcgcaatgccactgccgacaaaattgagcag
gccatttaccgcgttgatcgcgagaagaagcgtgaactgctggcccacttgattcagcaa
aatggctggttccaggtgctggtatttacgcgtaccaaacatggtgctaaccgccttgcc
gagcagctctccaagcaggacatcccctccatggcaatccatggtaataaaagccaggga
gctcgtactcgcgcactaacggcattcaagagtggcgacctacaggtactggtggccacc
gatatcgctgctcgcggtctggatattaatgagctgccccacgtggttaatttcgacctg
cccaacgtagcggaagattacgtccaccgcattggccgcaccggtcgggctggcagcaat
ggcgaagccgtttcgttggtatgtgtcgatgaagacgccctgctgggcaacattgagcgc
ctgatcaaacagacgctgcctaagcacattgagccaggttttgagcccgaccccagtatc
aaacctgagcccatcgaaaatggccgacgcaatcaacgtcagccgcgcgccaaacgcaaa
cccgaaggccagagtgccaataccggtggcgagcgtaaacgtcgcgcacggcgctag
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