Halomonas sp. BDJS001: OM794_15615
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Entry
OM794_15615 CDS
T10426
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
habd Halomonas sp. BDJS001
Brite
KEGG Orthology (KO) [BR:
habd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
habd03009
]
OM794_15615 (dbpA)
Enzymes [BR:
habd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OM794_15615 (dbpA)
Ribosome biogenesis [BR:
habd03009
]
Prokaryotic type
rRNA helicases
OM794_15615 (dbpA)
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UZH08774
LinkDB
All DBs
Position
complement(3352199..3353632)
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AA seq
477 aa
AA seq
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MATSLWPKQGNTVSDSSFSSLALPNVLLSNLASLGYHEMSPVQAESLPPMLAGRDVLAQA
KTGSGKTAAFGLALLAKLKVESFAVQGLVLCPTRELADQVAEELRRLARGMANVKILTLC
GGAPFGPQLGSLEHGAHIVVGTPGRIDEHLRKGSLTLESLTTLVLDEADRMLDMGFQATI
DDIIAETPADRQTLLFSATFPDEQSSGGLTAMTRGIMREPVMVKIAEVHDATTIQQHFYS
VADEETRFDALRQLLLVYRPATSVVFCNTKRETQAVAEQLTDAGFSAVALNGDLEQKDRD
RILILFSNQSTSILVATDVAARGLDIAQLDAVFNYQIARELDVHVHRVGRTGRAGASGIA
CTLVTPKESYRLERLEGLLEQAIKTEPLPKPQYSVPFEPLMATLQLAGGKKDKLRPGDIL
GALTSEGGLRGDQVGKIKVLARSAYVAVERDVIQQAQAKLERDKLKGRAFRVRRIRY
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggccacctcgctgtggcccaagcaaggtaataccgtgtctgactcctctttctcctcg
ttagcgttgccaaacgttctgctaagcaaccttgcgtcccttggctaccacgaaatgtcg
ccggtgcaggcggagagcctgccgcccatgctggccgggcgcgatgtattggcccaggcg
aaaaccggctcagggaaaacggcggcgtttggtttggccctgctggctaaattgaaagta
gagagcttcgcggtgcaaggcttggtgttgtgccccacaagggagctggccgatcaggtg
gcagaagaactgcgccggttagctcgtggcatggccaacgtaaaaatactcaccctctgc
ggcggcgcgccctttggccctcagctcggttctttagagcacggcgcgcacattgtggtg
ggcacaccggggcgtatagacgagcatttgcgcaaaggctcgctcaccctggagtccctc
acgacgctggtgctggacgaagcggatcggatgctggatatgggcttccaggcgaccatt
gatgacattattgctgagaccccagccgaccgccaaacgctgctgttcagcgcgactttc
ccagacgagcagtcatcgggcggcctaacggcgatgacccgcggcattatgcgtgaaccg
gtgatggtcaaaatcgccgaggtacacgacgccactacgatccagcagcatttttatagt
gtcgctgatgaagagacgcgattcgacgccctgcgccaactgttactggtctatcggccc
gcgaccagcgtggtattctgtaacactaaacgcgaaacccaggcagtggctgagcaactg
accgatgcagggtttagtgccgtggcgttaaacggtgatttagagcagaaagaccgcgat
cgcatacttattctgttctctaaccagagtacctctattttggtggccaccgacgttgcc
gcccgtggcctggatattgcccaactggacgccgtgtttaactaccaaattgcccgcgag
cttgatgttcatgtgcaccgggtcggtcgcaccgggcgtgccggggccagtggcattgcc
tgcacgttggtaacccctaaagagagttaccggctggagcggctggaagggttgctggag
caggcgattaaaaccgagcccctgccgaaaccccagtactcggtaccgttcgagccgcta
atggcgacgctgcagttagctggtggtaagaaagataagctgcgccccggtgatattctg
ggagcgctaaccagtgaaggtgggctgcgcggcgatcaagtgggtaaaatcaaagtgctc
gcccgcagtgcctatgtggccgttgagcgagacgtgattcaacaagctcaggccaaactc
gagcgtgataaattaaaagggcgtgctttccgtgttcgccgtatccgttactga
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