KEGG   Halomonas sp. BDJS001: OM794_18010
Entry
OM794_18010       CDS       T10426                                 
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
  KO
K11900  type VI secretion system protein ImpC
Organism
habd  Halomonas sp. BDJS001
Brite
KEGG Orthology (KO) [BR:habd00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:habd02044]
    OM794_18010 (tssC)
Secretion system [BR:habd02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   OM794_18010 (tssC)
SSDB
Motif
Pfam: VipB VipB_2 Microvir_H
Other DBs
NCBI-ProteinID: UZH09213
LinkDB
Position
complement(3871306..3872787)
AA seq 493 aa
MSDTAQKKSQTVEAQEEVSLLDQVMAQTRMAPADEGYDVAKQGVAAFISELLNGENAAPQ
VNKAVVDSMIVELDRKISRQVDEILHDTSFQQLESAWRGLKLLVDRTDFRENIKLDVLHA
TKEELLDDFEFAPEITQSGLYQHVYAGGYGQFGGEPVAGIIGHYDFTPSTPDMKLLQHTA
AVGAMAHAPFLSAVAPSFFGIDSFEELPNIKDFKAIFEGPKYARWRSLRESEDARYLGLT
APRFLLRMPYDPVENPIKTFNYRETVSEDHDHYLWGNTAYLLAERLTDSFAKYRWCPNII
GPQSGGAVENLPVHTYEALGQLQAKIPTEVLVTDRREFEMAEEGFISLTMRKGSDNAAFF
SANSVQKPKVFPNTPEGKDAETNYKLGTQLPYMFIINRLAHYIKVLQREQIGSWKERQDL
ERELNTWIRQYVADQENPPSDVRSRRPLRAASIQVSDVEGDPGWYQVSMSVRPHFKYMGA
NFELSLVGRLDKE
NT seq 1482 nt   +upstreamnt  +downstreamnt
atgagtgatacggcgcaaaagaaaagtcaaacggtggaagctcaggaagaggtttcttta
cttgatcaagtgatggcgcagacccgtatggcgccagcggatgagggctacgacgtagcc
aagcaaggcgttgctgcttttatttccgaactgttaaacggcgagaatgctgctccgcag
gttaataaagccgtagtggatagcatgatcgttgaacttgaccgaaaaattagccggcaa
gttgatgagattcttcacgacactagctttcagcagttggagtctgcatggcgtggcttg
aagctgttggtcgatcgcaccgatttccgtgaaaacattaagcttgatgtgcttcacgcc
accaaagaagagctgttggatgattttgagtttgccccggaaatcacccaaagcgggctc
tatcaacacgtttacgcaggcgggtatggccaatttggcggtgagccggtagcgggaatt
atcggtcactacgacttcaccccctcgaccccagatatgaagctgttgcagcacacggct
gctgtaggggctatggctcatgcaccattcctgtcagcagtggcaccttccttcttcggc
atcgatagcttcgaagagctgccgaatataaaagattttaaagccatctttgaagggccc
aagtacgctcgctggcgtagcttgcgtgagtcagaagacgcgcgctacttaggcctgacg
gcgcctcgcttcctgctgcggatgccctacgacccggtcgaaaaccctatcaagacattt
aactatcgtgaaaccgtcagtgaagatcacgatcattatttgtggggtaatacggcgtac
ctgctggccgagcgcttgaccgacagctttgctaaataccgctggtgcccgaacatcatt
ggccctcaaagcggcggtgcggttgaaaacttgcctgtccatacctacgaggcgctgggc
caactgcaggcaaaaattcccaccgaggtgctggtgacggatcggcgcgagttcgaaatg
gctgaagaaggcttcatttcgttaaccatgcgcaagggcagtgataacgctgctttcttc
tcggcaaactccgtacaaaagcccaaggtatttccgaacacgcctgaaggtaaagacgcc
gagaccaactacaagctgggtactcagctgccgtatatgttcatcatcaaccgtctggct
cactacatcaaagtgctccagcgtgagcagatcgggtcgtggaaagagcgtcaagacctt
gagcgtgagctaaatacctggatccgccagtacgtggccgaccaagagaacccgccgtcc
gatgtacgtagccgccgcccgctgcgtgccgcctctattcaagtgtctgatgtagaaggc
gatccgggctggtaccaggtgtccatgtcggtgcgcccgcactttaaatacatgggtgcc
aactttgagctgtcattagtcggacgtctcgacaaggaataa

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