Halorhabdus sp. BNX81: HBNXHr_0958
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Entry
HBNXHr_0958 CDS
T09448
Symbol
cdc48
Name
(GenBank) ATPase of the AAA class, CDC48 family
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
habn
Halorhabdus sp. BNX81
Pathway
habn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
habn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
HBNXHr_0958 (cdc48)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
habn03019
]
HBNXHr_0958 (cdc48)
03009 Ribosome biogenesis [BR:
habn03009
]
HBNXHr_0958 (cdc48)
04131 Membrane trafficking [BR:
habn04131
]
HBNXHr_0958 (cdc48)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
habn04147
]
HBNXHr_0958 (cdc48)
Messenger RNA biogenesis [BR:
habn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
HBNXHr_0958 (cdc48)
Ribosome biogenesis [BR:
habn03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
HBNXHr_0958 (cdc48)
Membrane trafficking [BR:
habn04131
]
SNARE
SNARE associated proteins
Others
HBNXHr_0958 (cdc48)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
HBNXHr_0958 (cdc48)
Exosome [BR:
habn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
HBNXHr_0958 (cdc48)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_5
TIP49
AAA_22
AAA_2
AAA_33
AAA_14
nSTAND3
NPHP3_N
RNA_helicase
AAA_28
Mg_chelatase
AAA_7
IstB_IS21
AAA_17
AAA_18
AAA_3
Sigma54_activat
ABC_tran
NB-ARC
DUF815
ATPase
Parvo_NS1
TsaE
AAA_30
nSTAND_NTPase5
AAA_11
AAA_24
SLFN-g3_helicase
NACHT
AAA_lid_PRS2_C
Motif
Other DBs
NCBI-ProteinID:
WEL21027
LinkDB
All DBs
Position
complement(966677..968905)
Genome browser
AA seq
742 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGAETTAAKVWRADRQDWN
TDTVRIDGFTRQNADAGIGERVEIRKAEAEKADSLVLAPPEEASVQFGSDAAGMVKRQIL
KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVETEPEGVVLITEDTDVELREEPISGYD
KTGGGITYEDIGGLENEIQRVREMVELPMKHPQIFKKLGIEPPSGVLLHGPPGTGKTLLA
KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEESPSIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLESRGQVVVIAATNRVDSVDPALRRPGRFDREIEIGVPDET
GREEILKIHTRGMPLSDDVDLPGLAEDTHGFVGADIESLTKEAAMKALRRYLPEIDLDEE
DIPPSLIDRMIIKRDDFKGALNEVSPSAMREVLVELPKISWDDVGGLESAKDEVQESIEW
PMTSPEKFHRMGVEPPSGVLLYGPPGTGKTLMAKAVANETDANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVAPTVVFFDELDSLAPGRGGQGSGSNVSERVVNQLLTEMDGLEDMED
VMVIGATNRPDMIDPALIRSGRFDRLVYIGEPDVDGREEILRIHTDESPLSPDVSLRELA
EITEGYVGSDLESIAREAAIQSLRENEDADSIGMAHFRSALEGVRPTVTDDIREYFEQME
DQFKGGGPDSRQRQGSDRIGFQ
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagttcaacttgaggtcgcgaaggcctacccgaacgactcgggccggggcatc
gcgcgcctcgatcccgatacgctgctgcacctgaagctctcccccggcgacatcatcgag
atcgaaggggccgagaccaccgctgcgaaggtctggcgggcggaccgccaggactggaac
accgacacggtccgcatcgacggcttcacccggcaaaatgccgacgcgggtatcggcgag
cgcgtcgagatccgcaaggccgaagccgagaaagccgactcgctcgtgcttgccccgccc
gaggaagcgagcgtccaattcggctcggacgcggccggtatggtcaaacggcagatcctc
aaacggccggtcgtcgagcgcgacatcgtccccgtgatgtcgagcacgaaccacccattc
atgcgctcgccgggccaggccatcccgctgatcgccgtcgagaccgaacccgaaggcgtc
gtcctcatcaccgaggacaccgacgtcgaacttcgggaggagcccatctccgggtacgac
aagaccgggggcgggatcacctacgaggacatcggcggcctggagaacgagatccagcgc
gtccgcgagatggtcgaactgccgatgaaacacccccagatcttcaagaaactgggaatc
gaaccgcccagcggcgtgctcctgcacggcccgcccgggacgggcaagacgttgctggcg
aaagccgtcgccaacgagacctcggcgagtttcttctcgatcgccggcccggaaatcatc
tcgaagtactacggggagagcgaacagcaactccgggagatcttcgaggacgccaccgag
gagtccccgtcgatcatcttcatcgacgaactcgactcgatcgcgcccaaacgcgaggac
gtcaccggcgaggtcgagcgccgcgtcgtcgcccaactcctgacgatgatggacggcctg
gaatcccgggggcaggtcgtcgtcatcgccgcgaccaaccgtgtcgactcggtcgatccc
gcgctccggcgccccggtcgcttcgaccgcgagatcgagatcggcgtgcccgacgaaacc
ggccgcgaggagatcctcaagatccacacccgcgggatgccactctcagacgatgtcgac
ctcccggggctggccgaggacacccacgggttcgtcggcgcggacatcgagagcctgacg
aaggaggccgcgatgaaggcccttcggcggtacctccccgagatcgatctggacgaggaa
gacatcccgccgagccttatcgaccggatgatcatcaagcgtgacgacttcaagggagcc
ctcaacgaggtctcaccgtcggcgatgcgggaagtgctcgtcgagttacccaaaatcagc
tgggacgacgtcggcgggctcgaatcggcgaaagacgaggtccaggagtcgatcgagtgg
ccgatgaccagcccggaaaagttccaccggatgggcgtcgaaccgccatctggagtgttg
ctctatgggccaccggggaccggcaagacgctgatggccaaagccgtcgccaacgagacc
gacgccaacttcatctcggtgcgcgggccacagctactgagcaagtgggtcggcgaaagc
gagaaggccatccgccagaccttccggaaggcccgccaggtcgcgccgacggtcgtgttc
ttcgacgaactcgactcgctggcccccggccgtggcggccagggctcggggtcgaacgtc
tccgaacgcgtcgtcaaccagttgctgaccgagatggacggcttagaggacatggaggac
gtcatggtcatcggcgcgaccaaccgcccggacatgatcgaccccgcactcatccgctct
ggtcggttcgaccgcctcgtttacatcggcgaacccgatgtcgacggccgcgaggagatc
ctccggatccacactgacgagtcgccgctctcacccgacgtctcgctgcgcgaactcgcc
gagatcaccgaaggctacgtcggcagcgacctagagagtatcgcccgcgaggcggccatt
cagtctctccgggagaacgaggacgccgattcgatcgggatggctcacttccggtcggcg
ctggaaggcgtccggccgaccgttaccgacgacatccgcgagtacttcgagcagatggaa
gaccagttcaagggcggcggccccgactcgcgccagcgccagggctccgaccggatcggc
ttccagtag
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