Halorhabdus sp. BNX81: HBNXHr_1417
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Entry
HBNXHr_1417 CDS
T09448
Symbol
sua7-4
Name
(GenBank) Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB
KO
K03124
transcription initiation factor TFIIB
Organism
habn
Halorhabdus sp. BNX81
Pathway
habn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
habn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HBNXHr_1417 (sua7-4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
habn03021
]
HBNXHr_1417 (sua7-4)
Transcription machinery [BR:
habn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
HBNXHr_1417 (sua7-4)
Prokaryotic type
Archaeal type
TFB
HBNXHr_1417 (sua7-4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Trm112p
A2L_zn_ribbon
Zn_ribbon_RRN7
Sigma70_r4
Zn_ribbon_tTFIIB
Cyclin_C
Zn_ribbon_3
GFA
Cas12f1-like_TNB
DZR
DUF1272
DZR_2
Auto_anti-p27
DUF8054_C
Zn_ribbon_8
DUF7575
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
WEL21480
LinkDB
All DBs
Position
complement(1409433..1410404)
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AA seq
323 aa
AA seq
DB search
MSDTTLRSHERANQHETTTDEETETQVCPECGGNLVTDSERGETVCGECGLVVEEDEIDP
GPEWRAFDAAEKDEKSRVGAPTTNMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRT
WNERFRTRDSKERNLKQALGEIDRMASALGLPENVRETASVIYRRALDENLLPGRSIEGV
STASLYAAARQAGNPRSLDEIDNVSRVEKDEVARTYRYVVRELKLEVKPADPTSYVPRFA
SDLELSEEAERHARDLLENAKQEGVHSGKSPVGLAAAAIYAASLLANEKVTQNEVSEVAN
ISEVTIRNRYHELLEAKQDIRTA
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatacgaccctcagaagccacgagcgagcgaatcagcacgagactaccaccgat
gaggagaccgagacacaggtctgtccggagtgtggtggcaacctggtaacggattccgag
cgcggcgagaccgtctgtggcgagtgtggcctcgtcgtcgaagaggacgaaatcgatccc
ggcccggagtggcgggccttcgacgctgcggaaaaagacgaaaagtcccgtgtcggcgca
ccgacgacgaacatgatgcacgacaaggggctctcgaccaacatcggctggcaggacaaa
gacgcctacggtaactccctgtccagccgccagcgcgagaaaatgcagcggttgcgcacc
tggaacgagcgcttccgcacccgcgattcgaaagaacgcaacctcaagcaggcactcggc
gagatcgaccgcatggcctcggcgctcggtctgcccgaaaacgttcgggagacggcaagc
gtcatctatcgccgcgcgctggacgagaacctcctgcccggccgctccatcgagggtgtc
tcgacggcgtcgttgtacgccgccgcccgacaggccggcaacccccgcagtctcgacgag
atcgacaacgtctcgcgggtcgaaaaagacgaagtcgctcgcacgtatcgatacgtcgtt
cgcgagttgaaactggaagtgaagcccgctgatccgacgagttacgtcccgcgattcgct
tcggatctcgaactcagcgaggaggccgaacgccacgcacgtgacctgctggaaaacgca
aagcaggagggcgtccactccgggaagagcccggtcggcctcgccgctgctgcgatctac
gcggcctcgttgctcgccaacgagaaggtgacccaaaacgaggtcagcgaggtcgcgaac
atctccgaggttacgatccgcaaccggtatcacgaactgctggaagccaaacaggacatc
cggacggcctga
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