Halorhabdus sp. BNX81: HBNXHr_1500
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Entry
HBNXHr_1500 CDS
T09448
Symbol
cdc48-2
Name
(GenBank) ATPase of the AAA class, CDC48 family
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
habn
Halorhabdus sp. BNX81
Pathway
habn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
habn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
HBNXHr_1500 (cdc48-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
habn03019
]
HBNXHr_1500 (cdc48-2)
03009 Ribosome biogenesis [BR:
habn03009
]
HBNXHr_1500 (cdc48-2)
04131 Membrane trafficking [BR:
habn04131
]
HBNXHr_1500 (cdc48-2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
habn04147
]
HBNXHr_1500 (cdc48-2)
Messenger RNA biogenesis [BR:
habn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
HBNXHr_1500 (cdc48-2)
Ribosome biogenesis [BR:
habn03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
HBNXHr_1500 (cdc48-2)
Membrane trafficking [BR:
habn04131
]
SNARE
SNARE associated proteins
Others
HBNXHr_1500 (cdc48-2)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
HBNXHr_1500 (cdc48-2)
Exosome [BR:
habn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
HBNXHr_1500 (cdc48-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_14
AAA_22
TIP49
AAA_5
AAA_33
nSTAND3
NPHP3_N
RNA_helicase
AAA_28
AAA_7
IstB_IS21
NB-ARC
Mg_chelatase
DUF815
AAA_25
TsaE
AAA_lid_PRS2_C
AAA_18
ATPase
AAA_3
ABC_tran
Sigma54_activat
Parvo_NS1
AAA_17
AAA_30
AAA_11
nSTAND_NTPase5
AAA_24
AAA_19
NACHT
PhoH
SLFN-g3_helicase
Zeta_toxin
bpMoxR
NTPase_1
ATPase_2
Bac_DnaA
ATP-synt_ab
Zot
Molydop_binding
Motif
Other DBs
NCBI-ProteinID:
WEL21562
LinkDB
All DBs
Position
complement(1492859..1495123)
Genome browser
AA seq
754 aa
AA seq
DB search
MKLTVKPLKQKDAGRGLAAIDRAAMEQLDLENGDYVVLEGREGRAVARVWPGYPEDTGDG
VVRIDGQLRQEADVGIDDRIDVEKADVKPARSISVALPQNLRVRGNIGPHVRNKLSGQAV
TTGQTVPFSLGLGPVSSVGGQKIPLKIAETDPEGTVVVTEQTEIEVSQQPAEEITGEAPE
DARQTPDVTYEDIGGLDDELEQVREMIELPMRHPELFNQLGIEPPKGVLLHGPPGTGKTL
MAKAVANEIDAFFTTISGPEIMSKYYGESEEQLREMFDEAEENAPSIVFIDEIDSIAPKR
DDTSGDVERRVVAQLLSLMDGLEERGDVIVIGATNRLDALDPALRRGGRFDREIEIGVPD
KKGRKEVLQVHTRGMPLNDEIDIDEYAERTHGFVGADIEQLAKESAMNALRRIRPEIDLE
ADEIDAEILENLEITGDDFKAALKGIEPSALREVFVEVPDVSWEDVGGLEDTTERLRETI
QWPLEYPGVFEQMDMESAKGVLLYGPPGTGKTLLAKAVANEAQSNFISVKGPELLNKYVG
ESEKGVREVFSKARENAPTVVFFDEIDSIAGERGRNMGDSGVGERVVSQLLTELDGLEDL
EDVVVVATTNRPDLIDAALIRPGRLDRHIHVPVPDEGARRKILEVHTRDKPVAESVDLDD
LAARMDGYVGADIEAVAREAAMAATREFIHSVDPEEVDDSVGNVLIDESHFEHALNEVGP
SVDEETREEYEEIEQRFDKRENELDEPEVGKTFQ
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcaccgtcaagccactcaagcagaaggacgccggccgcgggctggccgcgatc
gatcgcgcggcgatggagcaactcgacctggagaacggcgactacgtggttctcgaaggg
cgcgagggccgcgccgtcgcgcgagtctggcccggctatcccgaagacaccggcgacggc
gtcgtccggatcgacggccaactccgccaggaggctgacgtcggcatcgacgatcgaatc
gacgtcgaaaaggccgacgtcaagcccgcccgctcgatctcggtcgccctcccccagaac
ctccgggtccgcggaaatatcggcccccacgtccggaacaaactctccgggcaggccgtg
acgaccggccagacggtccccttctcgctcgggctcggcccggtctccagtgtcggtggc
cagaagatcccgctgaagatcgccgagactgacccggaagggacggtcgtcgtcaccgag
cagaccgaaatcgaggttagccagcagccggccgaggagatcaccggtgaggcacccgag
gacgcccgccagacgcccgacgtgacctacgaggacatcggcgggctcgacgacgagtta
gagcaggtccgggagatgatcgagttgccgatgcgccatcccgagctgttcaaccagctg
ggcatcgagccgccgaagggtgtgctactgcacggcccaccggggaccggcaagacgctg
atggccaaggccgtcgccaacgagatcgacgcgttcttcacgacgatctctggcccggag
atcatgtcgaagtactacggcgagagcgaagagcagctccgggagatgttcgacgaggcc
gaggagaacgccccgtcgatcgtcttcatcgacgagatcgactccatcgcccccaagcgt
gacgacaccagcggcgacgtcgaacgtcgcgtcgtcgcccagctcctcagcctgatggac
ggcctcgaagagcgcggcgacgtgatcgtcatcggcgcgaccaaccgcctggatgcgctc
gaccccgccctccgtcgtggcggtcgcttcgatcgcgagatcgagatcggcgtgcccgac
aaaaagggtcgcaaggaggtcttgcaggtccacacccgcgggatgccgctgaacgacgag
atcgacatcgacgagtacgccgagcggacccacggcttcgtcggtgctgacatcgagcaa
ctcgcaaaggagagcgcgatgaacgccctccggcgcatccgtccggagatcgacctcgaa
gccgacgagatcgacgccgagatcctcgaaaacctggagatcaccggggacgacttcaaa
gcggcgctgaagggcatcgaaccctccgcgctccgggaagtgttcgtcgaagtcccggac
gtctcctgggaggacgtcggtggactcgaagacaccaccgaacgtctcagagagaccatc
cagtggccccttgagtacccgggggtcttcgagcagatggacatggagtccgccaagggc
gtgctcctgtacggcccacccgggaccggcaagaccttgctcgcgaaggccgtcgccaac
gaggcccagagcaacttcatctcggtgaaggggcccgaactcctgaacaagtacgtcggg
gaaagcgagaagggcgtccgcgaggtcttctcgaaggcccgggagaacgcacccacggtg
gtgttcttcgacgagatcgactcgatcgcgggcgagcgcggccgtaacatgggcgattcg
ggcgtcggcgaacgcgtcgtctcccagctcctgactgaactcgacgggctcgaggatctg
gaggacgtcgtcgtggtggcgaccacgaaccgcccggacctcatcgacgccgcactcatc
cgccccggccggctcgacaggcacattcacgtcccggtacccgacgagggagcacgccga
aagatcctcgaggttcacacccgcgacaagccggtggccgagagtgtcgatctcgacgac
ctggcggcccgtatggacgggtacgtcggtgccgacatcgaagcggtcgcccgcgaggcc
gcgatggctgccacccgggagttcatccacagcgtcgaccccgaggaggtcgacgacagt
gtggggaacgtcctcatcgacgagagccacttcgaacatgccttaaacgaggtcggcccc
agcgtcgacgaagagacccgtgaggaatacgaggagatcgaacagcgcttcgacaaacgc
gagaacgaactcgacgaacccgaggtcggcaagaccttccagtaa
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