Halorhabdus sp. BNX81: HBNXHr_1539
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Entry
HBNXHr_1539 CDS
T09448
Symbol
cdc48-3
Name
(GenBank) ATPase of the AAA class, CDC48 family
Organism
habn
Halorhabdus sp. BNX81
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_33
AAA_22
AAA_5
AAA_2
TIP49
AAA_28
AAA_14
nSTAND3
AAA_18
RNA_helicase
Mg_chelatase
Parvo_NS1
AAA_25
IstB_IS21
AAA_3
AAA_24
AAA_19
CDC48_2
NPHP3_N
AAA_7
DUF815
AAA_17
Zeta_toxin
Sigma54_activat
ABC_tran
TsaE
AAA_11
Sigma54_activ_2
PhoH
bpMoxR
SLFN-g3_helicase
DUF5906
NB-ARC
DUF1905
MazE_antitoxin
Big_3_5
Motif
Other DBs
NCBI-ProteinID:
WEL21601
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Position
complement(1534642..1536741)
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AA seq
699 aa
AA seq
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MVDADDGISATVKGAKKRDAGRGIARLPEPVRNQLGVLSGDPVRIEGDGQTVAKVWPEDG
TGSYVRIDADTRSNAEVTVGSEVTLRRASLQDADRVDLRPIDGTIEGSIESTIDDRLGNT
PVQVGDRVTVPEVGTFHVEDTDPEGTVRVVNGTTISVGQPMAADDSPDTGTEGSGETNEP
GDVTYENIGGLDDELDRVREMIELPLSEPDVFTRLGIDPPKGVLLYGPPGTGKTLIARAV
ANEVDAYFEAISGPEIVSKYKGESAEQLRDAFERADDEAPSILFIDEIDSIAGARDDDSD
MENRVVAQLLTLLDGLESRGQVVVIGATNRVDAVDPALRRGGRFDREIEIGVPDREGREE
ILEVHTRGVPLADDVDLDRLAGRMHGFVGADVASVVTEAAMAALQREREDPSVTWADFEQ
ALAAVEPSAMRAYVAESPTVDFGDVGGLDDVKDTLREAVEWPLQYGPLFEATDTDPPTGV
LLYGPPGTGKTLLARALAGETDVNFIRVAGPELLDRYVGESEKAVRELFERARQTAPTIV
FLDEIDAIAARRGEGHEVTERVVSQLLTELDAAGEDPNLVVLAATNRREALDDALLRPGR
LETHIEVPAPSQAARRAILEVHTAEKPLGEAVDLDEIAAATDGYSGADLDALVRDASMRA
IRRVADDQMPAVANERAEEVMIQSEDFAAARERIEPSQV
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggtagacgccgacgacgggatctcggccaccgtcaagggggcgaaaaagcgcgacgcg
ggccggggtatcgcccggcttcccgaaccagttcgaaaccaactcggcgtcctgagtggc
gacccggtccgcatcgagggtgacggccagactgtcgcgaaagtctggcccgaggacggt
actgggtcgtacgttcgcatcgacgccgacacgcgatccaacgccgaggtgaccgtcggt
tcggaggtgacgctccggcgagcatcgctgcaggacgccgaccgagtcgacctgagaccg
atcgacggcacgatcgaaggcagcatcgagtcgacgatcgacgatcgactcgggaacacc
cccgtccaggtcggtgaccgggtgaccgtcccggaggtcgggaccttccacgtcgaagac
acggacccggaggggaccgtcagggttgtcaatgggaccacgatctccgtgggacagccg
atggctgccgacgacagtcccgataccgggaccgaggggtcgggagagacgaacgaacca
ggcgacgtcacctacgaaaacatcggtggactcgacgacgaactcgaccgggtccgggag
atgatcgaactcccgctatccgagcccgacgtgttcacccgcctcgggatcgacccgccg
aagggcgtcctgctctatggtccgccgggcacgggaaaaacactgatcgcccgtgccgtc
gctaacgaagtcgacgcgtacttcgaggccatctccgggccggagatcgtctcgaagtac
aagggcgaaagtgccgaacagctccgggacgccttcgaacgggccgacgacgaggccccg
tcgatcctgttcatcgacgagatcgactccatcgccggcgcgcgcgacgacgacagcgac
atggaaaaccgcgtggttgcgcagttgctcaccctgcttgacgggttggaatcccgcggc
caggtcgtcgtcatcggcgcgaccaaccgcgtcgatgccgtggatccggcgctgcggcgc
gggggacgcttcgatcgcgaaatcgaaatcggcgtccccgatcgagagggtcgcgaggag
attctcgaagtccatacccgtggcgttccgctcgccgatgacgtggatctcgatcgcctc
gccggccggatgcacgggttcgtcggggcagacgtggcgtcggtggtcactgaggccgcg
atggccgccctccagcgcgaacgcgaggatccctctgtcacctgggctgacttcgaacag
gcgctggcagccgtcgagccatcggcgatgcgggcctacgtcgccgagtcgccgaccgtc
gacttcggagacgtcggcggtctcgatgacgtcaaagacacactcagggaagccgtcgaa
tggccgctccagtacggcccgctgttcgaagcgaccgatacagacccaccaacaggcgtc
ctcctctatggtccgccgggcaccggcaagacgttactggctcgtgcgctggctggagag
accgacgtcaacttcattcgcgttgctggtcccgagttactggaccgatacgtcggcgag
agcgagaaggcagtcagggaactgttcgagcgcgcccgccagaccgcgccgacgatcgtc
tttctcgacgagatcgacgcgatcgccgcccgacgtggcgagggtcacgaggtaaccgag
cgtgtggtctcccaattgctcaccgaactcgacgccgcgggcgaggatccgaacctcgtc
gtcctggcggcgaccaaccgccgggaggcactcgacgacgcactcctccggcccggacgg
ctcgaaacccatatcgaagtccccgcgcccagccaggcggctcggcgggcgatcctcgag
gtgcacacggctgagaagccgctgggagaagctgtcgatctcgatgagatcgcggcagcg
accgacggctactccggggcggatctcgacgcgctggtccgggatgcgtcgatgcgcgcg
atcaggcgggtcgctgacgaccagatgccagccgtcgccaacgaacgcgctgaggaggta
atgatccagagcgaggacttcgcggcggctcgcgagcggatcgagccgtcacaggtctaa
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