Halorhabdus sp. BNX81: HBNXHr_1809
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Entry
HBNXHr_1809 CDS
T09448
Symbol
rtcB
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
habn
Halorhabdus sp. BNX81
Brite
KEGG Orthology (KO) [BR:
habn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
habn03016
]
HBNXHr_1809 (rtcB)
Enzymes [BR:
habn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HBNXHr_1809 (rtcB)
Transfer RNA biogenesis [BR:
habn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HBNXHr_1809 (rtcB)
Prokaryotic type
tRNA splicing ligases
HBNXHr_1809 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WEL21866
LinkDB
All DBs
Position
complement(1814276..1815736)
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AA seq
486 aa
AA seq
DB search
MSTYDAGEFTLEKVREYVWEIPQEGEMRVPARVLASEELLDEISDDLSLQQLKNTTHLPG
IQQYALAMPDAHQGYGFPVGGVAGIDAETGVISPGAVGYDINCGVRMLKTNLTYSDIQGR
EEQLVDALFEAIPSGLGGGGVVQTDVDTLEEVLTRGVEWALDEGYAVEDDLAHCEDEGVR
PGADPDAVSKKAKDRGRQQLGSLGSGNHFLEVQRVTDVYREDVAESFGLSEDQIVVLIHC
GSRGLGHQVCTDYLRDIEQAHQGLLSQLPDKELAAAPAGSHLAEAYYGAMNAAINFAWVN
RQLIMHRTREVFADVFDRDWRDMEMELLYDVAHNIAKKETHTIEGEDRELFVHRKGATRA
FPAGHPEIPAAYRDVGQPVIIPGSMGAGSYVLRGGEHSMAETFGSTAHGAGRLMSRTEAK
NTYWGEDVQDDLRDQEQIYVKAESGATVAEEAPGVYKDVDEVVRISDELGIGDRVARTFP
VCNIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgagtacctacgacgccggtgagttcaccctggagaaggtacgcgagtacgtctgggag
atcccacaggaaggcgagatgcgcgttcccgcgcgggtcctcgccagcgaggaactcctc
gacgagatcagcgacgacctctctctgcagcaactcaagaacaccacccacctccccggg
atccagcagtacgccctcgcgatgcccgacgcccaccaggggtatgggttcccggtcggc
ggcgtcgccggcatcgacgccgaaaccggcgttatatcgcctggagcggttggttacgat
attaattgcggtgtaagaatgctgaaaacgaaccttacgtacagcgacattcagggtcgc
gaagagcaactcgtcgacgcgctgttcgaggcgatcccgtcggggttgggcggcggtggt
gtcgtccagaccgacgtcgacacactggaggaagtcctcacacgcggcgtcgagtgggcg
ctcgacgagggctacgccgtcgaagacgatctcgcccactgcgaggacgagggagtccga
cccggggcagatcccgacgcagtctcgaagaaagcaaaggacaggggccgccagcaactc
gggagtctgggcagcgggaatcacttcctggaagtccagcgcgtcacggacgtctatcgc
gaggacgtcgccgaatctttcggtctcagcgaagaccagatcgtcgtcctgattcactgt
ggctcacgcggcctgggccaccaggtctgtaccgactaccttcgggatatcgagcaggcc
catcagggactgctctcgcagttgccggacaaggaactcgcggccgcgcccgccgggagc
catctcgccgaggcgtactacggggcgatgaacgccgcgatcaacttcgcgtgggtcaac
cgccagctcatcatgcatcgaaccagggaggtctttgccgacgtcttcgaccgcgactgg
cgcgatatggagatggaactgttgtacgacgttgcccacaacatcgccaagaaggagacc
cataccattgagggcgaggatcgtgaactcttcgtccaccggaagggcgcgacgcgggcc
ttcccggccggtcatccggaaatcccggctgcctaccgcgacgtgggccagccggtcatc
atccccgggagcatgggggccgggagttacgtcctccgcggcggcgagcactcgatggcg
gagacgttcggttcgacggcccacggcgcgggccgactcatgtcccggaccgaggccaag
aacacctactggggcgaggatgtccaggacgacctccgggaccaagaacagatctacgtc
aaggccgagagcggggcgaccgtcgccgaggaggccccgggcgtctacaaggacgtcgac
gaggtcgtgcggatctcggacgaactcgggatcggggatcgagtcgctcggacgtttccg
gtctgtaacatcaaaggctag
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