Halorhabdus sp. BNX81: HBNXHr_2323
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Entry
HBNXHr_2323 CDS
T09448
Symbol
rpa1-2
Name
(GenBank) Replication factor A1
KO
K07466
replication factor A1
Organism
habn
Halorhabdus sp. BNX81
Pathway
habn03030
DNA replication
habn03420
Nucleotide excision repair
habn03430
Mismatch repair
habn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
habn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HBNXHr_2323 (rpa1-2)
03420 Nucleotide excision repair
HBNXHr_2323 (rpa1-2)
03430 Mismatch repair
HBNXHr_2323 (rpa1-2)
03440 Homologous recombination
HBNXHr_2323 (rpa1-2)
03460 Fanconi anemia pathway
HBNXHr_2323 (rpa1-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
habn03000
]
HBNXHr_2323 (rpa1-2)
03032 DNA replication proteins [BR:
habn03032
]
HBNXHr_2323 (rpa1-2)
03400 DNA repair and recombination proteins [BR:
habn03400
]
HBNXHr_2323 (rpa1-2)
Transcription factors [BR:
habn03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
HBNXHr_2323 (rpa1-2)
DNA replication proteins [BR:
habn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
HBNXHr_2323 (rpa1-2)
DNA repair and recombination proteins [BR:
habn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
HBNXHr_2323 (rpa1-2)
MMR (mismatch excision repair)
HBNXHr_2323 (rpa1-2)
DSBR (double strand breaks repair)
HR (homologous recombination)
HBNXHr_2323 (rpa1-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
REPA_OB_2
CDC24_OB3
OB_Ssb-like
Motif
Other DBs
NCBI-ProteinID:
WEL22367
LinkDB
All DBs
Position
complement(2316342..2317814)
Genome browser
AA seq
490 aa
AA seq
DB search
MGAIEDVYADLDADVSEEDFREAVEEKVEQMGGLADEETAAMLIAHELTENEAQTVADVQ
AGMEEVRFLAKVLSIGELRTFERDGDDEDGRVINVEAADETDSLRLTFWDGEAVAVDEGE
VEVGDVLRVKGRPQEGYNGLEVSVDQAEQDLDATIDVEPGDGETIDALTMGQSNVTVEGV
VLDTEPVRTFDRDDGSEGRVANLSIGDETGRVRVTLWDERADRVTEIDAGATVEVVDGYV
REREGDLEVHVGEEGAIDELDDADIEYAPETTPIDAVELEETVDIGGVVRSTDPTRTFDR
DDGSEGQVKNIRIQDDTGDIRVALWGEKADRDLAPGDEVVCADVDIQDGWQDDLEASAGW
GSTVVVLEDGASMATTPDADDAGTAGDSNGQDASASTGLSAFADDGAGGKTADDEAGERK
PADEDATGDAGGDAEAVEFTGTVVQTGDPVILDDGEETVTVDTGESVRLGEEVTIRGQRR
DGEIDAEELF
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcgatagaggacgtatacgcggatctcgacgccgacgtctccgaggaggacttc
agggaagccgtcgaggagaaggtcgaacagatggggggactggccgacgaggagacggcc
gcgatgctgatcgcccacgaactcaccgagaacgaggcccagacggtcgccgatgtccag
gccggcatggaggaggtccggtttctggcaaaggtgctctcgatcggcgagttgcggacc
ttcgagcgtgatggcgacgacgaggacggccgcgtgatcaacgtcgaggcggccgacgag
accgacagcctccgactgacgttctgggatggggaagctgtcgccgtcgacgagggggaa
gtcgaagtcggcgacgtcctccgggtgaagggtcgcccgcaggagggctacaacggcctg
gaggtcagcgtcgatcaggccgaacaggatctcgacgcgacgatcgacgtcgaacccggt
gacggcgagaccatcgatgcgctcacgatggggcaatccaacgtcaccgtcgagggggtc
gtcctcgacaccgaaccggtgcggacgttcgaccgcgacgacggctcggagggacgggtc
gcgaatctctcgatcggcgacgagaccggccgcgtccgggtaacgctgtgggacgagcgc
gccgaccgcgtgacggagatcgacgccggcgcgaccgtcgaggtcgtcgacggctacgtc
cgggaacgcgagggcgatctggaggttcacgtcggcgaggagggggcgatcgacgaactc
gacgacgccgatatcgagtacgccccggagacgacgccgatcgacgccgtcgagctggag
gagacggtcgacatcggcggcgtcgtccgctcgaccgatccaacacggacgttcgatcgg
gacgacggctcggaggggcaggtcaagaacatccggatccaggacgacaccggcgacatc
cgggtggcgctgtggggcgagaaggccgaccgcgacctcgcaccgggcgacgaggtcgtc
tgtgccgatgtggatattcaggacggctggcaggacgacctcgaggcctcggccggatgg
ggctcgacggtcgtcgtcctcgaagacggcgcgtcgatggcgacgacgcccgacgcggac
gatgcaggcactgcgggcgacagcaatggccaggacgcgagcgcgtcgaccgggctctcg
gcgttcgccgatgacggggctggcgggaagacagcggatgacgaggcaggcgagcgcaaa
ccagcggacgaagatgcgacgggtgatgccggcggggacgccgaagcagtcgagttcacg
gggaccgtcgtccagacgggcgatccggtgatcctcgacgatggcgaggagaccgtcacc
gtcgacaccggcgagtcagtccggctcggcgaggaagttacgattcggggacaacgacgc
gatggcgagatcgacgccgaggaactgttctag
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