Halobacterium sp. BOL4-2: JRZ79_04470
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Entry
JRZ79_04470 CDS
T07284
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
habo
Halobacterium sp. BOL4-2
Pathway
habo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
habo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JRZ79_04470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
habo03019
]
JRZ79_04470
Messenger RNA biogenesis [BR:
habo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JRZ79_04470
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Motif
Other DBs
NCBI-ProteinID:
QRY25663
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Position
838387..839733
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AA seq
448 aa
AA seq
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MEIEIATIGGYEEVGRQMTAVRAGDDIVIFDMGLNLSKVLVHDNVETEKMHSLDLIDMGA
IPDDRVMSDLEGDVKAIVPTHGHLDHIGAISKLAHRYDAPIVGSPFTIELVKGEIESEQK
FGVENDLVKMEAGGTMEIGDRCELEFVHVTHSIIDAINPVLHTPEGAVVYGLDKRMDHDP
VLEDPIDMERFREIGREGEGVLCYIEDCTNAGKKGRTPSESTARRHLKDVLTSVADYDGG
IVATTFSSHISRVSSLVEFAKEIGREPILLGRSMERYSGTAERMGRVNFPDDLGMFGHRK
SVDRAFKRVMNEGKENFLPIVTGHQGEPQAMLTRMGRGETPYDIEDGDKIIFSASVIPEP
TNKGQRYQSEQLLRMQGARIYDDIHVSGHLREEGHYQMLDALQPQHLIPAHQDMKGMAPY
AKLAKSQGYKIGRDLHMTENGNTIQLVE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgaaattgcaacaatcggcggctacgaggaagtcgggcggcagatgactgcc
gtgcgcgcgggcgacgacatcgtgatcttcgacatgggcctcaacctctcgaaggtcctg
gttcacgacaacgtcgagacagagaagatgcacagcctcgacctgatcgacatgggcgcg
atcccggacgaccgcgtcatgtccgatctcgaaggcgacgtgaaggcgatcgtgccgaca
cacggccacctcgaccacatcggggcgatctcgaagctcgcacaccgctacgacgcgccc
atcgtgggcagcccgttcacgatcgagctcgtgaaaggcgagatcgagagcgagcagaag
ttcggcgtcgagaacgacctcgtgaagatggaggccggcggcacgatggagatcggcgac
cgctgcgagctcgagttcgtgcacgtcacacactccatcatcgacgcgatcaaccccgtg
ctccacacgccggagggcgcagtcgtctacggcctggacaagcgcatggaccacgatccg
gtcctggaggacccgatcgacatggagcggttccgcgagatcggccgcgagggcgagggc
gtcctctgttacatcgaggactgcacgaacgccggcaagaaggggcggacgccatccgag
agcacggcccgtcgccacctcaaagacgtactgaccagcgtcgcggactacgacggcggg
atcgtcgctacgacgttctccagtcacatctcgcgggtgtcctcgctggtggagttcgcg
aaggagatcggccgcgagccgatcctgttggggcgctcgatggagcggtactcgggcacc
gccgagcgcatgggccgcgtgaacttccccgacgacctcgggatgttcggccaccggaag
tccgttgatcgcgcgttcaagcgcgtcatgaacgagggcaaggagaacttcctcccgatc
gtcaccggccaccagggcgagccacaggcgatgctgactcgcatggggcgcggcgagacg
ccgtacgacatcgaggacggtgacaagatcatcttctcggcgagcgtcatccccgagccg
acgaacaagggccagcgctaccaaagcgagcagctgctgcgcatgcagggcgcgcgcatc
tacgacgacatccacgtctcgggccacctccgcgaggaggggcactaccagatgctggac
gcgttgcagccccagcacctgatcccggcccaccaggacatgaaggggatggcaccgtac
gcgaagctcgcgaagagtcaggggtacaagatcggccgcgacctgcacatgacagagaac
ggcaacaccatccagctcgtcgagtaa
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