Halobacterium sp. BOL4-2: JRZ79_10115
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Entry
JRZ79_10115 CDS
T07284
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
habo
Halobacterium sp. BOL4-2
Pathway
habo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
habo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JRZ79_10115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
habo03019
]
JRZ79_10115
03016 Transfer RNA biogenesis [BR:
habo03016
]
JRZ79_10115
Enzymes [BR:
habo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JRZ79_10115
Messenger RNA biogenesis [BR:
habo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JRZ79_10115
Transfer RNA biogenesis [BR:
habo03016
]
Prokaryotic type
tRNA degradation factors
JRZ79_10115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QRY24740
LinkDB
All DBs
Position
complement(1905716..1907005)
Genome browser
AA seq
429 aa
AA seq
DB search
MSDSEPAQGSIEDQGPVEISPELARQLENKRDDLFEKFDLHDEFPPDVVAEAEARTEDVQ
AEIQAEIEDRADMRPLPTWTVDPVDAQDFDDAISVLERDDEYVLWVHIADVTHYVHPDSE
MWAEAIDRANTVYLPGYTMHMLPPVLAETVCSLVPGEDRLAHTVEMHLDKDDLSYQTIEI
YKSVIHSDERLTYKDAEQRLDDETAPLHDDLSLVFDLADQMHEQRKAEGSLVLNPRRDRA
HTIIEESMLKANKAVTHELMWNRGVEAVYRVHPQPSPEEWDDALQEIQELNGVSIPGDAW
DDPRKAVNATLEQAPERQLGKIQWAVMKVMPRARYMNDPFGGHHALNFEIYGHFTSPIRR
MSDLVNHWIVYQNDVPETLISLCDRASDKQQAGETAEREYRDFLEEVGLDPDAVNNRGVT
VVDSPTTSS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcgattctgaacccgcccaggggtccatcgaggaccagggtcccgtcgaaatctcg
cccgaactcgcccgccaactcgaaaacaaacgcgacgacctcttcgagaagttcgacctc
cacgacgagttcccgccggacgtcgtcgccgaagccgaagcccgcaccgaagacgtccaa
gcggagatccaggccgaaatcgaggaccgcgcggacatgcgcccgctgcccacgtggacc
gtcgaccccgtcgacgcccaggacttcgacgacgcgatctccgtgctggagcgcgacgac
gagtacgtgctctgggtgcacatcgccgacgtcacccactacgttcacccggactcggag
atgtgggcggaagccatcgaccgcgcgaacactgtctacctccccgggtacaccatgcac
atgctcccgccggtgctcgccgaaacggtgtgttcgctggtgcccggcgaggaccgcctc
gcgcacaccgtcgagatgcacctcgacaaggacgacctctcgtatcagaccatcgagatc
tacaagtccgtcattcacagcgacgaacggctcacctacaaggacgccgaacagcgcctc
gacgacgaaaccgcgcccctccacgacgacctctcgctggtgttcgatctcgccgaccag
atgcacgagcagcgcaaggccgaggggagcctcgtgctcaacccccgccgcgaccgcgcc
cacaccatcatcgaggagtcgatgctcaaggcgaacaaggcggtcacccacgaactcatg
tggaaccgcggcgtcgaagccgtctaccgcgttcacccccagccgtcccccgaggagtgg
gacgacgccctccaggagatccaggaactcaacggcgtctccatccccggcgacgcctgg
gacgacccccggaaggcggtcaacgcaaccctcgaacaagcccccgagcgccagctcggc
aagatccagtgggcggtgatgaaggtgatgccgcgcgcgcgatacatgaacgatcccttc
ggcggccaccacgcgctcaacttcgagatctacggccacttcaccagccccatccgccgc
atgagcgacctcgtgaaccactggatcgtctaccagaacgacgttcccgaaaccctcatc
tcgctctgtgaccgcgccagcgacaaacaacaagccggtgaaaccgccgaacgcgaatac
cgcgacttcctcgaagaggtcggcctcgaccccgacgcggtgaacaaccgcggcgtcacg
gtcgtcgactcaccgacgacctcctcgtag
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