Haliovirga abyssi: HLVA_05560
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Entry
HLVA_05560 CDS
T09313
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
haby
Haliovirga abyssi
Pathway
haby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HLVA_05560 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haby03019
]
HLVA_05560 (pnp)
03016 Transfer RNA biogenesis [BR:
haby03016
]
HLVA_05560 (pnp)
Enzymes [BR:
haby01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HLVA_05560 (pnp)
Messenger RNA biogenesis [BR:
haby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HLVA_05560 (pnp)
Transfer RNA biogenesis [BR:
haby03016
]
Prokaryotic type
tRNA degradation factors
HLVA_05560 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_NusA_2nd
KH_2
S1_2
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
BDU49987
UniProt:
A0AAU9DF42
LinkDB
All DBs
Position
660505..662613
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AA seq
702 aa
AA seq
DB search
MFNEKMVEMELAGRKLTFTTGKMARQAGGAVILSYGETVLLATVVGKKKPREGADFFPLT
VNFIEKTYSAGKIPGGFFKREARPSTNATLTARLIDRPIRPLFPEGFKNEVQIDITVLSY
DGENTTDYLGIIGASAALSISDVPFLGPVAGVIVGYVDGEYVLNPLPEQLEKSEINLSVA
GTKDAITMVESGAKEVSEELMLGAIMFGHDAIKTIVAIQEEFQKLAGKEKMEFEVKEVPV
EIKEFVDINGKEKLEKAVLVHGKLEREEAVDSLELELEELLATKYEDGEIPKEDLSEFKG
YFHDLMKKMVRDTIVYKHHRVDGRAIDEIRPISIDIDILPIPHGTALFTRGETQGLVITT
LGTAEDEQIIDGLDKAIRKHFYLHYNFPPYSVGETGFLRGPGRRELGHGALAERALREVM
PSQEEFPYTVRVVSEILESNGSSSMATVCGGSLSLMAAGVPIKKHVAGVAMGLIKQGEDF
VVLTDIMGLEDHIGDMDFKVTGTRKGITALQMDIKITGISREIMEKALEQALKGRLFILN
KMEAVIDKPRVEFAPTVPRLATLTIDKEKISDLIGPGGKNIKGIIEKTEAKIDIKDDGNV
SIFAINEEKLNETLTMIKAYTQDIEVGEIYTGKVIKIMKFGAFVEVLPGKEGLLHVSELD
HKRVANVEDVLKEGEEVMVKVIGKEKGKFSLSRKALIPKEEK
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacgaaaaaatggtagaaatggaattagcaggaagaaaattaacatttactact
ggaaaaatggcaagacaagcaggaggagcagttatccttagctatggagaaactgtatta
ttagcaactgttgtagggaaaaagaaaccaagagaaggggcagatttttttccattaaca
gttaattttatagagaaaacatattctgcaggtaaaatacctggaggatttttcaaaaga
gaagcaagaccttcaacaaatgcaacattaacagcaagacttatagatagaccaataaga
cctttatttccagaaggatttaaaaatgaagtacaaatagatataacagttttatcatat
gatggagaaaacactacagattatcttggtataataggtgcttcagcagcacttagcatc
tcagatgttccatttttaggaccagttgcaggtgttatagttggttatgttgatggagaa
tatgtattaaatccattgccagaacaattagaaaaaagtgaaataaacttatcagtggca
ggaactaaagatgcaattacaatggtagaatctggagcaaaagaagtttcagaagagcta
atgttaggtgcaattatgtttggacatgatgctataaaaacaatagtagctatacaagaa
gagtttcaaaaattggctgggaaagaaaaaatggaatttgaagtaaaagaggttccagta
gagattaaagagtttgtagacataaatggaaaagaaaaattagaaaaagctgttttggtt
catggaaaattagaaagagaagaagctgtagacagtttagaattagaattagaagagcta
ttagctacaaaatatgaagatggtgaaattccaaaagaggatttaagtgaatttaaagga
tattttcatgatttaatgaaaaaaatggttagagatactattgtatataaacatcacaga
gttgatggtagagcgatagatgaaatcagaccaattagtatagatatagatatattacca
attcctcatggaacagcactatttacaagaggagaaactcaaggattggtaataactaca
ttaggaacagcagaagatgaacaaattatagatggacttgataaagcaattagaaaacat
ttttatttgcattataacttcccaccttacagtgtaggtgaaactggatttttaagaggt
cctggaagaagagaattaggacatggagctttagcagaaagagctttaagagaggttatg
ccttcacaagaagagttcccatatacagtaagagttgtatctgagattttagagtcaaat
ggttcttcatctatggcaacagtttgtggtggttcattgtcgttaatggcagctggagtt
ccaataaaaaaacatgttgctggagttgcaatgggacttattaaacaaggagaagatttt
gttgtattaacagatataatgggattagaagatcatataggggatatggattttaaagtt
acaggaactagaaaaggtattacagctttgcaaatggatataaaaattactggaataagc
agagaaataatggagaaagcattagaacaagctctaaaaggaagattatttatattaaat
aaaatggaagctgtaattgataaaccaagagtagaatttgctccaactgtaccaagatta
gctacattaactatagataaagaaaaaatttctgacttaattggacctggtggaaaaaat
attaagggaataatagaaaaaacagaagcaaaaatagatataaaagatgatgggaatgtt
agtatatttgctattaatgaagaaaaattaaatgaaacattaactatgataaaagcatat
actcaagatattgaagtaggtgaaatatatacaggaaaagttatcaaaataatgaaattt
ggagcttttgtagaagtattacctggaaaagaagggttattgcatgtatcagaattagac
cacaaaagagttgcaaatgtagaagatgtattaaaagaaggcgaagaagttatggtaaaa
gttataggaaaagaaaaaggtaaatttagtcttagtagaaaagcattaataccaaaagaa
gaaaaataa
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