Haliovirga abyssi: HLVA_09100
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Entry
HLVA_09100 CDS
T09313
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
haby
Haliovirga abyssi
Pathway
haby03420
Nucleotide excision repair
haby03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
haby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HLVA_09100
03430 Mismatch repair
HLVA_09100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
haby03400
]
HLVA_09100
Enzymes [BR:
haby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HLVA_09100
DNA repair and recombination proteins [BR:
haby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HLVA_09100
MMR (mismatch excision repair)
Other MMR factors
HLVA_09100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_11
DEAD
AAA_12
CarD_TRCF_RID
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
BDU50341
UniProt:
A0AAU9DVU3
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All DBs
Position
1055618..1057783
Genome browser
AA seq
721 aa
AA seq
DB search
MSILDGLNEEQRMAAETLDGPVLILAGAGSGKTRTITYRVAHMIKEKNISPYDILAVTFT
NKAAKEMRERVESLVGEDSGKIQISTFHAFGVKLLRIYGKHVGYDSNFNIYDSDDQKRVI
KSILKKLNMDNDGLKPSAILSKISKLKEEGIFPLEYEKMAIDYYSKKILSIYIEYQKALK
ENNAFDFSDILVYTNELLNNKEILEKLQNRYKYIMVDEYQDTNKTQYNIITKIAAKNKNL
CVVGDEDQSIYGFRGADIRNILNFEKDYKDATVIKLEKNYRSTNIILSTANALIKNNETS
RGKNLWTDREGGELISVYEAETAGEEAYHVSNEIKKIVDVVGGYKNIAILYRTNAQSRLF
EESFIKAKIPYKIFGGVQFYQRKEIKDIISYLNVVNNTADNFSIRRIINVPSRGIGEKTI
KRLEEYREDMNVPLFYAIKNVDNISTITPKARIALKKLYSIFEDLINLSKEETVTDLIDT
LLERTKILDTFKLNNEDERVKNIYELRNGIQELEKENGYIGLGDYLENIALSANTDNMDE
SDDYVKLMTVHNSKGLEFPVIFMVGAEEELFPSLRENTEEELEEERRLCYVAVTRAKDRL
YITYSRTRATFGNSSFMRVPSRFIGEMPEKNLNNEKVYMNSNGYKNDSTKVASELNAKIE
KNKKKKKKFKGDYAVGDYVIHKKFGEGKVKGIDINRVDIYFPGHGDKKFPTKIASKFLSK
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgagtatattggatggattgaatgaagagcaacgaatggcagcagaaacattagatgga
cctgttttgattttagcaggagcaggaagtggaaaaactaggacaataacatatagagtt
gcacatatgataaaagaaaaaaatatatctccatatgatattctagcggtaacatttact
aataaagcagcaaaagagatgcgagaaagggtagaatctttagttggagaagattctgga
aaaattcaaatttcgacatttcatgcttttggtgtgaaattacttagaatttatggaaaa
cacgttggatatgatagcaattttaatatttatgattctgatgatcaaaagagagttata
aaaagtatattaaagaaattaaatatggataacgatggattgaaaccatcagcaatatta
tctaaaatatcaaaattaaaagaagaagggatattccctttagaatatgaaaaaatggca
attgattattatagtaaaaaaatattatcaatttatatagaatatcaaaaagcattaaaa
gaaaataacgcatttgatttttctgatatcttggtatacacaaatgagttattaaataac
aaagaaatattagaaaaattgcaaaatagatacaaatatattatggtagatgaatatcaa
gatacaaataaaacacaatataatattataacaaaaattgctgctaaaaataaaaattta
tgcgtagttggagatgaagatcaaagcatttatggatttagaggagcagacataagaaat
atattaaattttgaaaaggattataaagacgcaacagttattaagttagaaaaaaattat
agatctacaaatataatattaagtactgcaaatgctttaataaaaaataatgaaacttca
agaggaaaaaacctttggacagatagagaaggcggagaattaatttctgtatatgaagca
gaaactgcaggagaagaagcatatcatgtatctaatgaaataaaaaaaatagttgatgtg
gtaggtggatataaaaatattgcaatattatatagaacaaatgctcaatcaagactattt
gaagaatcatttataaaagctaaaataccatataaaatttttggtggagttcaattttat
caaagaaaagagataaaagatataatatcttatttgaatgtggtaaataatacagctgac
aattttagtattagaagaattataaatgttccttcaagaggtattggagaaaaaacaatt
aaaagattggaagaatatagagaagatatgaatgtacctctattttatgcaataaaaaat
gtggataatatttcaacaataactccaaaagcaagaattgcattaaaaaaactttattct
atattcgaagatttaataaatttatctaaagaagagacagttactgatttaatagatact
ttattagaaagaacaaaaattttagatacttttaaattaaataatgaagatgaaagagtt
aaaaatatatatgaattaagaaatggtattcaagaattagaaaaagaaaatggatatatt
ggattaggagattatcttgaaaatatagcgttgtctgcaaatacagataatatggatgaa
agtgatgactatgtcaaattaatgactgtacacaattcaaaagggttagagttccctgtt
atctttatggttggggcagaggaagaactatttccatctttaagagaaaatacagaagaa
gagctagaagaggaaagaaggctttgttatgtggcagtaactagagcaaaagatagatta
tatataacttactctaggacaagagccacttttggaaattcaagctttatgagagttcca
tctagatttataggagaaatgccagagaaaaatctaaataatgaaaaagtatatatgaat
tctaatggatataaaaatgatagtacaaaagttgcttctgaattaaatgctaagatagaa
aagaataagaaaaagaagaaaaaatttaaaggtgattatgctgttggagattacgttatt
cataaaaaatttggagaaggaaaagtaaaaggaatagatataaatagagttgatatatat
tttccaggacatggagataagaaatttccaacaaaaatagcttccaaatttttatcaaaa
tcttag
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