Haliovirga abyssi: HLVA_15480
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Entry
HLVA_15480 CDS
T09313
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
haby
Haliovirga abyssi
Pathway
haby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HLVA_15480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haby03019
]
HLVA_15480
03009 Ribosome biogenesis [BR:
haby03009
]
HLVA_15480
Enzymes [BR:
haby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HLVA_15480
Messenger RNA biogenesis [BR:
haby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HLVA_15480
Ribosome biogenesis [BR:
haby03009
]
Prokaryotic type
rRNA helicases
HLVA_15480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
NDK
Cas3-like_C_2
BioW
NAT10_TcmA_helicase
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BDU50979
UniProt:
A0AAU9DUN8
LinkDB
All DBs
Position
complement(1781075..1782661)
Genome browser
AA seq
528 aa
AA seq
DB search
MELTKFKELGLSENILKALKKKGFEEPTPIQEKTIPLLLKGEIDIIGQAQTGTGKTAAFG
LPLIDRLEEKSKSVQALVLAPTRELAIQVAEEINSLKGNKKLVVAPIYGGQSIEGQISKL
RRGVDIVVGTPGRVIDHINRKTLKLENIKYFILDEADEMLNMGFIDDVKLVFEKAPAEKK
VLLFSATMPREILNIAKKYMNKYEVIAVKKQDLTTSLTEQIYFELNERDKFDALCRIIDV
EREFYGVVFCRTKLDVDRVASKLSDRGYYAEGLHGDVSQAQRERTLNKFKKKKTMILVAT
DVAARGLDVNNLSHVINYALPQDPESYIHRIGRTGRAGKEGTAITFVTPSEYRKLLFIQK
VANTKIKKSKLPKVSDILQIKKERIKSDILDILENDKIGDKEIEFAKEIMGEKDPLAVIA
SILKLSFSEELEDNNYKEIREAKIDTSGKVRLFVALGKKDNMTLKSLVDYIIENAKVSSR
KIREVKVFENFSFITVPFEEAEIILEVFKRNKRGRRSIIERAKERKRK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggaattaacaaagtttaaagaattaggattatcagaaaatatattaaaggcattaaaa
aagaaaggttttgaagaaccaacaccaatacaagaaaaaactattcctttattattaaaa
ggagaaatagatataatagggcaagcacaaacaggaactggaaaaacagcagcatttggt
ttgcctttaatagatagacttgaagaaaaatcaaaatcagttcaagctttagtacttgca
ccaacaagagaattagcaatacaagtagcagaagagataaattcattaaaaggaaataaa
aaattagtagtagcaccaatatatggtgggcaatcaattgaaggacaaatatctaaatta
agaagaggagtagatatagtagtaggaactcctggtagagttatagatcatataaataga
aaaactttaaaattagaaaatataaaatatttcatacttgatgaagctgatgaaatgtta
aatatgggatttattgatgatgtaaaattagtgtttgaaaaagcaccagcagaaaaaaaa
gtgttacttttttcagcaacaatgccaagagaaattttaaatatagctaaaaaatatatg
aataaatatgaagtaatagctgtaaaaaaacaagatttaactacaagtttaacagaacaa
atatattttgaattaaacgaaagagataaatttgatgctttatgtagaataatagatgta
gaaagagaattttatggagtagtattttgtagaacaaaattagatgtagatagagtagct
agcaaattatctgatagaggatattatgcagaaggattacatggagatgtatcacaagct
caaagagaaagaactttgaataagtttaaaaagaaaaaaacaatgatacttgtagcaact
gatgtagcagcaagaggattagatgttaataatttgtctcatgtaattaactatgcattg
ccacaagatccagaatcttatatacatagaataggaagaactggaagagcaggaaaagaa
ggaacagcaataacatttgtaactccaagtgaatacagaaaacttttatttattcaaaaa
gtagcaaatacaaagataaagaagagtaaattaccgaaagtgtcagatattttacaaata
aaaaaagagagaataaaatcagatattttagatatattagaaaatgataaaataggagat
aaagagatagagtttgcaaaagaaatcatgggagaaaaggatccattagcagtgatagct
tcaattttaaaattatcatttagcgaagaattagaagataataattataaagagataaga
gaagctaaaatcgatacatctggaaaagtaagattatttgtagcattaggaaaaaaagat
aatatgactttaaaatcacttgttgattatattatagaaaatgcaaaagttagctcaaga
aaaattagagaagtaaaagtatttgaaaacttttcatttataactgttccatttgaagaa
gctgaaattatacttgaagtatttaaaagaaataaaagaggaagacgttcaattatagaa
agagctaaagagagaaagagaaaataa
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