Haliovirga abyssi: HLVA_21930
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Entry
HLVA_21930 CDS
T09313
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
haby
Haliovirga abyssi
Pathway
haby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HLVA_21930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haby03019
]
HLVA_21930
03009 Ribosome biogenesis [BR:
haby03009
]
HLVA_21930
Enzymes [BR:
haby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HLVA_21930
Messenger RNA biogenesis [BR:
haby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HLVA_21930
Ribosome biogenesis [BR:
haby03009
]
Prokaryotic type
rRNA helicases
HLVA_21930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BDU51624
UniProt:
A0AAU9DW64
LinkDB
All DBs
Position
pHIC:complement(176784..178118)
Genome browser
AA seq
444 aa
AA seq
DB search
MNKFKELGVSDTLVDILISNGIKKPTPIQEETITLIHDGMDIIAEAETGTGKTLAFLLPI
FDKMNENSQNIQTLIVTPTRELAIQITQEAEKLNVNNKFNILAAYGGRDINVQMNKLNKS
VDLIIATPGRLIDHLKRKTVNLSKINTLIIDEADLILHMGFKNEIEFIVNASAKERQTLC
FSATISSQVKKLAYKITKEPQIVMIEKREVLLKNIDQYLIETTDRRKQDALCQMLNKENP
FLAIIFCRTKLRVDKLEDELYKRGYNCQKLHSDIPQSKREKIMKSFKNAEIQYLVATDVA
SRGIDITGVTHVYNYDIPENGEGYIHRIGRTGRAGKNGKTYLFVTPKDKELLKIIERDIK
MEIPKMELEHIPDVKAENSLPKLKYNKRINVNTKNFFEDRNGKNVKENKNSRDKTNKKKK
IINKNRKNSNKSKKSIIDSKKRKK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttaaagaacttggggttagcgacacacttgtagatatacttatttctaat
ggtataaaaaaaccaactccaattcaagaagaaacgataacacttatccatgatgggatg
gatataatagcagaggcagagacagggacaggaaaaactttagcatttttacttccgata
tttgataaaatgaatgaaaatagccaaaatatacaaacgttgattgttacaccaacaaga
gaacttgcaattcagattacacaagaagctgaaaaacttaatgtaaataataaatttaat
attcttgctgcttatggtggaagagatataaatgtgcagatgaataaattaaataaaagt
gtagatttaattatagcaactccaggaagattaatagatcatttaaagagaaaaactgtt
aatttgagtaaaattaatactcttataatagatgaagcggatctaatacttcatatggga
ttcaaaaatgaaattgaatttatagttaatgcttcagcaaaagaaagacaaactctttgt
ttttctgcaactataagttcacaagtaaaaaaacttgcatataaaattacaaaagaacct
caaattgtaatgattgaaaaaagagaagttctactcaaaaatattgatcaatatttaata
gaaacaacagatagaagaaagcaagatgctctttgtcaaatgttaaataaggaaaatcct
tttttggctataattttctgtagaacaaaattaagagtagacaaattagaagatgaactt
tataaaagaggatataattgtcaaaaattacatagtgatatacctcaatcaaaacgtgaa
aaaataatgaaatcttttaaaaatgcagaaatacaatatttggtggcaacagatgtagct
tcgagaggtattgatataacaggtgtcactcatgtatataattatgatattcctgaaaat
ggagaaggatatattcatagaataggaaggactggaagagctggtaaaaatggaaaaact
tatctttttgttacaccaaaagataaggaattgttaaaaatcattgaaagagatataaaa
atggaaatccctaaaatggaattagagcatattccagatgtaaaagctgaaaatagtttg
ccaaagcttaaatataataaaagaattaatgttaatactaaaaatttctttgaagatagg
aatggaaaaaatgtcaaagaaaataaaaatagcagagataaaacaaataaaaagaaaaaa
ataattaataaaaatagaaagaatagtaacaaaagtaaaaagagtattatagatagcaaa
aaaagaaagaaataa
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