Helicobacter acinonychis: Hac_0299
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Entry
Hac_0299 CDS
T00371
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hac
Helicobacter acinonychis
Pathway
hac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Hac_0299 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hac03400
]
Hac_0299 (mfd)
Enzymes [BR:
hac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hac_0299 (mfd)
DNA repair and recombination proteins [BR:
hac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Hac_0299 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
CAJ99142
UniProt:
Q17YY4
LinkDB
All DBs
Position
252268..255282
Genome browser
AA seq
1004 aa
AA seq
DB search
MIQSILYRALNKGFDCQILACKDFKESELAKEVISYVKPHIKAILFPEFRAKKNDDLRSF
FEEFLQLLGALREFYQALEKKQEAIIIAPISALLHPLPKKELLESFKITLLEKYDLKELK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDTECESIKEFDPLTQMSL
KEDLLEIEITPTLFSLDEQSYKNLQTKVEQSPLNSFSKDLASFGLWFLDEKAQDLLSVYP
SIISPKALEEIQELASLNELDLQRFKSLKILETPQGYEDLEIHARTIESFIALHSHHKIT
LLAPNKTILDNVLGTLDTSHIQCVIAPFVLNFKTPDKIFISLNSFERKKKHKKSKLALNE
LNAGEWVVHDDYGVGVFSQLIQHSVLGSKRDFLEIAYLGEDKLLLPVENLHLIARYVAQS
DSVPTKDRLGKGSFLKLKAKVRTKLLEIASKIIELAAERNLILGKKMDTHLAELEIFKTH
AGFEYTNDQEKAIAEISKDLGSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYVSEKNKLLKAVESGLIDVLVGTHAILGTKF
KNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKKELENLIPKLKIAI
LHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNDQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYSLYTRMLEDAIYELSGGKKRLEKSVEIQLSVSAFLNPELIASDSLRLD
LYRRLSLCENVDEVGQIHEEIEDRFGKIDALSEQFLQIITLKILANELGILKLSNFNQNI
TIAYSDETKGSLKAPSKDDNDILETLLKHLRAQISLKRRKNASF
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
gtgatccaatctatcctttatagagccttaaataaaggctttgattgtcaaatactcgct
tgtaaggattttaaagagtctgagcttgctaaagaagtgataagctatgttaagccacat
attaaagccattcttttcccagaatttagggctaaaaaaaatgacgatttgcgttcgttt
tttgaagaatttttacagcttttaggggctttaagggagttttatcaagccttagaaaaa
aagcaagaggctattatcattgcccctattagcgcgttattgcaccctttacctaaaaaa
gaacttttagagagctttaaaatcactcttttagaaaaatacgaccttaaggagttaaaa
gacaagctcttttattatggttatgagattttagatttagtggaagtggaaggggaggcg
agctttaggggggatattgtagatatttatgcacctaattctaaggcgtatcgcttgagt
ttttttgacacagagtgcgagagcattaaggaatttgacccactcactcaaatgagtctt
aaagaggatttattagaaattgaaataacccccacgctttttagtttggacgaacaatct
tataaaaatttacaaacaaaagtagaacaaagccccctaaatagcttctctaaagattta
gctagttttggtttgtggtttttagacgaaaaagcgcaagacttgttaagcgtttatcca
agcattataagccccaaggctttagaagaaattcaagaattagcgagcttaaacgaattg
gatttacagcgtttcaaatctttaaaaatcttagaaaccccccaaggctatgaagattta
gaaatccatgcacgcacgatagaaagctttattgctttacactcacaccataaaatcacg
cttctagcccctaataaaacgattttagacaatgtcttaggtacacttgatacaagccac
attcaatgcgttatcgccccctttgtgttaaattttaaaacccctgataaaatttttatc
tcgctcaattcttttgaaaggaagaaaaaacacaaaaaatccaagctcgctttgaatgaa
ttgaatgcgggcgagtgggtggtacatgatgattatggggtgggtgtgttttctcaatta
atccagcacagcgttttagggagcaagagagattttttagagatcgcttatttgggcgaa
gacaaactgctactaccggtagaaaatttgcatctaatcgctcgctatgtggcgcaaagc
gacagcgtacctactaaagacaggctagggaaagggagttttctcaaacttaaagctaaa
gtaagaaccaaacttttagaaattgcaagtaagattattgaattagcggctgaacgcaat
ttaatcttaggtaaaaagatggacacgcatttagcggagttggaaatctttaaaacgcat
gcgggttttgaatacactaacgatcaagaaaaagccatcgctgaaatctcaaaggattta
ggctctcatagagtgatggacaggttattgagcggtgatgtgggctttgggaaaacggaa
gtagcgatgcatgccattttttgcgcgtttttaaacggctttcaaagtgcgttagttgtg
cctactaccttactagcccaccagcactttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggataggtatgtgagcgaaaaaaacaagcttttaaaggcg
gtagaatcagggttaattgatgtgcttgtaggcacgcatgcgattttaggcacgaaattt
aaaaacttgggtttaatggtggtggatgaagagcataaatttggcgtgaaacaaaaagaa
gctttaaaagaattgagtaaaagcgtgcattttttaagcatgtccgccacgcctatccca
cgcactttaaacatggcgctctctcaaattaaaggcattagctctttaaaaaccccacct
acagacagaaagcctagccgcacttttttgaaagaaaagaatgatgaattattaaaagag
attatccatagagaattgcgccgtaatgggcaaattttttatatccataaccatattgct
agtatttccaaagtcaaaaaagagctagaaaatttaatccctaaactcaaaatcgctatt
ttgcattcccaaattaacgctaatgaaagcgaagaaatcatgttagagtttgctaaaggg
aactatcaggttttattatgcacttctattgtggaatccggcattcatttgcctaacgct
aacacgattattattgataatgcacagaattttgggttggctgatttgcaccaattgaga
gggcgtgtggggagaggcaagaaagaaggtttttgctattttcttatagaagatcaaaag
agtttgaacgatcaagctttaaaacgcttgctcgctttagaaaaaaattcgtatttaggt
agtggggagagtatcgcttatcatgatttagaaattagggggggtgggaatttgcttgga
caagatcaaagcgggcatattaaaaatatcggttattcgctttatacacgcatgcttgaa
gatgcgatttatgaattgagtggggggaaaaaaaggcttgaaaaaagcgtagaaatccaa
ttgagcgtgagcgcttttttaaaccctgaactcatcgcaagcgatagtttgaggttggat
ttgtaccgccgtttgagtttgtgtgaaaatgtggatgaggtggggcaaatccatgaagaa
atagaagacaggtttggcaaaatagacgctttgagcgagcaatttttacaaatcattacg
cttaaaattttggctaatgagcttggcatcctcaaactttctaatttcaatcaaaatatc
accatcgcttatagcgatgaaactaaagggagtctaaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttacgcgctcaaatttctttaaaacggcgtaaa
aacgcttcattttaa
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