Helicobacter acinonychis: Hac_0875
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Entry
Hac_0875 CDS
T00371
Symbol
rho
Name
(GenBank) Transcription termination factor rho; High confidence in function and specificity
KO
K03628
transcription termination factor Rho
Organism
hac
Helicobacter acinonychis
Pathway
hac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hac_0875 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hac03021
]
Hac_0875 (rho)
03019 Messenger RNA biogenesis [BR:
hac03019
]
Hac_0875 (rho)
Transcription machinery [BR:
hac03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Hac_0875 (rho)
Messenger RNA biogenesis [BR:
hac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Hac_0875 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
ATPase_2
Spore_III_AA
AAA_22
AAA_28
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
CAJ99657
UniProt:
Q17XG9
LinkDB
All DBs
Position
765407..766723
Genome browser
AA seq
438 aa
AA seq
DB search
MNENAPTHKSSHKVKTHTPVSGYHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLIFEI
LKTQVTQGGYILFTGILEIMSDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVT
GQVRSPKDQEKYYALLKIEAINYLPLDEIKNRPLFDNLTPLFPDEQIKLEYEPTKVTGRM
LDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQR
SVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSS
GKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNS
EIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDVEALSFVYS
KMQQTKDNEEFLNLMNEK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaacgcgcctacgcataaaagttcgcacaaagtcaaaacgcacacgccagtg
agcggttatcacattgaagatttacgcacttaccctaccgaaaagcttttagaaatcgct
aacaagctcaaagtagaaaacccccaagaattcaagcggcaagacttgatatttgaaatt
ttaaaaacccaagttacgcaaggcggatacattctttttactgggattttagaaatcatg
tccgatggttatggctttttaagggggtttgatgggagtttttcagatgggcataatgac
acttatgttagcccttctcaaatcagacgctttgctttaaggaatggcgatattgttacc
ggtcaagtgcgctccccaaaagaccaagaaaaatactacgctcttttaaaaatagaagct
atcaattatttgcctttagatgagattaaaaatcgccctttgtttgacaacctaaccccc
ctattccctgatgaacaaatcaaattagaatacgaacccactaaagttaccggtaggatg
ttggatttatttagccctgtgggtaagggtcaaagggctttgatcgtcgcgccaccaaga
actgggaaaacggagcttatgaaagaactcgctcaaggcatcacttctaaccaccctgaa
gtggaattgattatccttttagtggatgagcgccctgaagaagtaacagatatgcaacga
agcgttaaaggtcaagtttttagctccacttttgatttgcccgcaaacaaccacataaga
atcgctgaattggttttagaaagagctaaaagacgagtggaaatgggcaaagatgtggtg
gttttattagattctatcactcgtttagcaagagcctataacgctgtaacgccttcaagc
ggtaaggtcttaagtgggggcgtggatgcaaacgctttacacagacccaagcgctttttt
ggagccgcaaggaatattgaagagggtgggagtttaacgattatcgctactgcgttgatt
gaaacgggttcaagaatggatgaggtgatttttgaagaatttaaaggcactgggaatagc
gaaattgttttagcgagaaatattgcagacaggcgcatttatccggcctttgatatttta
aaatccggcacacgaaaggataatatcttacttggaaaagaccgcttgactaaagtgtgg
gtcttaagaaatgtgatgcaacaaatggatgatgtggaagctttaagctttgtgtattct
aaaatgcaacaaactaaagacaacgaagaatttttaaatttaatgaacgaaaaataa
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