Halobaculum sp. CBA1158: Hbl1158_04940
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Entry
Hbl1158_04940 CDS
T08013
Name
(GenBank) single-stranded DNA binding protein
KO
K07466
replication factor A1
Organism
hacb
Halobaculum sp. CBA1158
Pathway
hacb03030
DNA replication
hacb03420
Nucleotide excision repair
hacb03430
Mismatch repair
hacb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hacb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hbl1158_04940
03420 Nucleotide excision repair
Hbl1158_04940
03430 Mismatch repair
Hbl1158_04940
03440 Homologous recombination
Hbl1158_04940
03460 Fanconi anemia pathway
Hbl1158_04940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hacb03000
]
Hbl1158_04940
03032 DNA replication proteins [BR:
hacb03032
]
Hbl1158_04940
03400 DNA repair and recombination proteins [BR:
hacb03400
]
Hbl1158_04940
Transcription factors [BR:
hacb03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
Hbl1158_04940
DNA replication proteins [BR:
hacb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
Hbl1158_04940
DNA repair and recombination proteins [BR:
hacb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
Hbl1158_04940
MMR (mismatch excision repair)
Hbl1158_04940
DSBR (double strand breaks repair)
HR (homologous recombination)
Hbl1158_04940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
REPA_OB_2
CDC24_OB3
OB_MEIOB_N
OB_Ssb-like
EF-G_D2
RADX
Motif
Other DBs
NCBI-ProteinID:
UIP01235
LinkDB
All DBs
Position
complement(927458..928930)
Genome browser
AA seq
490 aa
AA seq
DB search
MGAIEDVYDDLDADVPFEEFEAAVEQKVEDMGGLADEETAAMLIAHELRDEEVNSVADIE
PGMDEVKFLAKVMSVGEVRSFERDGEDEDGRVLNVEVADESGRVTVSLWDKVAVDAAERL
QVGDVLRIMGRPKEGYSGLEVSVDKVEPDDDAEVDVEAVEQYRVEDLSMGATDVDLLGVI
LDTDTVRTFDRDDGSEGKVSNMTVGDETGRVRVTMWDDMADRVEEVEAGETVEIVDGYVR
EREGDLELHVGSRGAIDEVDEDVEYVPETTDIADLELDEVADIAGGVIETSEKRTFDRDD
GSQGQVRNVRIKDDTGEIRVALWGDKADRDIDLADRVAFTDVEIQDGWQDDLEASAGWRS
SVSVLEDADGDAGGTGGASGGTTGGSTGRDAGQGGLDSFESTDSGGSGGTASATATAESA
DGDAGADGDPGDAGAVVEFTGTVVQAGDPVVLDDGTQTRSVETSATLRLGEEVTVRGVEE
DGTIDAEDVF
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgggcgctatcgaggacgtctacgacgacctggacgccgacgtccccttcgaggagttc
gaggccgccgtcgagcagaaggtcgaggatatgggcggactggccgacgaggagaccgcg
gcgatgctgatcgcccacgaactgcgcgacgaggaggtcaacagcgtcgccgacatcgag
cccgggatggacgaggtgaagttcctcgcgaaggtgatgagcgtcggcgaggtgcgaagc
ttcgagcgcgacggcgaggacgaggacggccgcgtgctcaacgtcgaggtggccgacgag
tccggccgcgtcaccgtctcgctgtgggacaaagtcgccgtcgacgccgcggagcgtctc
caggtgggcgacgtactccggatcatgggtcgtcccaaggaggggtacagcgggctcgag
gtgtccgtcgacaaggtcgagcccgacgacgacgccgaggtcgacgtggaggccgtcgag
cagtaccgcgtcgaggacctctcgatgggtgcgacggacgtggacctgctcggggtcatt
ctcgacacggacacagtccgaacgttcgaccgcgacgacggctccgaggggaaggtgtcg
aacatgaccgtcggcgacgagaccggccgcgtccgcgtcaccatgtgggacgacatggcc
gaccgcgtcgaggaggtggaggcgggcgagaccgtcgagatcgtcgacgggtacgtccgg
gagcgcgagggcgacctcgagctacacgtgggctcccggggtgcgatcgacgaggtcgac
gaggacgtggagtacgtccccgagacgaccgacatcgccgacctcgaactcgacgaggtc
gccgacatcgccggcggcgtcatcgagaccagcgagaagcgcaccttcgaccgcgacgac
ggctcgcaggggcaggtgcgaaacgtccggatcaaagacgacaccggcgagatccgggtg
gcgctgtggggcgacaaggccgaccgcgacatcgacctcgccgaccgggtcgccttcacc
gacgtcgagatccaggacggctggcaggacgacctggaggcgtcggccggctggcgctcc
tcggtctccgtgctcgaggacgccgacggcgacgccgggggcacgggcggcgcgagcggg
ggaacgacgggcggatcgaccggacgcgacgccggtcagggcggactcgactcgttcgag
tcgaccgactcgggtggctccggcggcacagcgtcggcgacggcgaccgcggagtcggcc
gacggcgacgcgggtgcggacggtgaccccggcgacgccggtgccgtcgtggagttcacg
gggacggtcgtgcaggcgggcgatccggtcgtactcgacgacgggacccagacgcggtcg
gtggagacctcggcgacccttcggctcggcgaggaggtcaccgtccggggcgtcgaggag
gacggtaccatcgacgccgaggacgtgttctga
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integrated database retrieval system
