Helicobacter apodemus: CDV25_00510
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Entry
CDV25_00510 CDS
T05516
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
had
Helicobacter apodemus
Pathway
had03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
had00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDV25_00510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
had03019
]
CDV25_00510
03009 Ribosome biogenesis [BR:
had03009
]
CDV25_00510
Enzymes [BR:
had01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDV25_00510
Messenger RNA biogenesis [BR:
had03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDV25_00510
Ribosome biogenesis [BR:
had03009
]
Prokaryotic type
rRNA helicases
CDV25_00510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AWI35033
UniProt:
A0A2U8FFU3
LinkDB
All DBs
Position
95722..97242
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AA seq
506 aa
AA seq
DB search
MAKDFADEVSDFLNFGFKKSVLRGIKELGFIQPSPIQKEAIPAILDGLDVIAQAQTGTGK
TAAFGLPLINSLKHNGSIEALIITPTRELAMQVSDEIFQLGKYNKVRTVCFVGGQSVFKQ
LELLDKKPQIVIATPGRLLDYLRNHKLKSFSPRVVVLDESDEMLDMGFLDDIEEIFQYLY
KDHQTLLFSATMPIPIKHLAQKILNNPKFIKITPENTTNEDISQRYYIINEAEREEAIVR
LIDSEMPSKAIIFTRMKKEADILAKRLIERGYKACAMHGDMEQRERHRSIKAFKDSKSNI
LVATDIAARGLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEFKELR
RIKENTKATIELYEIPNIQDTISKKDTQWIEKILKYPISDEALRLYEQVRSSADMTQLVC
KLLSMLLEEVKVLGPNKIGLRKKDLQKFQRELKQEEKATYKKQKPDHPKKNDYSKKQNQK
ERKVGQAKKTHKTSNSTKTKRNSKRK
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagattttgctgatgaggtttcagactttttgaattttgggtttaaaaaaagt
gtattgagaggtattaaagagttgggttttattcagccaagccctattcaaaaagaagcc
attccggctattttagatgggcttgatgtgatagcacaggctcaaacagggacaggaaaa
actgcagcatttgggctacctttaattaatagtttaaaacataatggaagtattgaagca
ttaattatcacccccacacgagagcttgctatgcaagtaagtgatgaaatttttcaatta
ggcaaatataacaaagtccgcacggtttgctttgttggcggacagtctgtttttaaacaa
ttagaactcttagataaaaagccacaaattgttatcgcaactccgggaagattattagat
tatcttcgtaatcataagttaaaaagtttttctccacgcgttgttgtgttagatgaatct
gatgaaatgcttgatatgggatttttagacgatattgaagagatttttcaatatctctat
aaagaccatcaaactttacttttttcagcaactatgcctattcctattaagcatttagcc
caaaagattcttaataatccaaaatttattaaaatcacaccagaaaacactactaatgaa
gatatttcacagcggtattatattattaatgaggcagaacgcgaagaagctattgtgcgt
ttaattgatagtgagatgccctctaaagctattatctttacgcgtatgaaaaaagaagcc
gatattttagctaagcgactaatagagcgtggatataaggcgtgtgcaatgcacggagat
atggagcagagggagcgacataggtctattaaagcctttaaagattctaagagtaatatt
ttagttgcgacagatattgcagcgcgtgggcttgatattagtggagttagccatgttttt
aacttccatattcccctaaatccagaatcttatgtccatcgtataggtaggacaggtaga
gcaggcaaaaaaggggttgctattacacttgcaacacctttagagtttaaagaattgcgt
agaataaaagaaaatactaaggctaccattgagctttatgaaatacctaatattcaagat
accattagcaaaaaagatacgcaatggatagaaaaaatcttaaaatacccaattagtgat
gaggctttgcgtctttatgagcaggtaagaagtagtgcggatatgactcaattagtttgt
aaattactttcaatgttgcttgaagaagtgaaagttttaggtcctaataagattggtttg
agaaaaaaggatttgcaaaaattccaaagagaattaaaacaagaagagaaagctacttat
aaaaaacaaaaaccagatcatcctaaaaaaaacgattatagtaaaaaacaaaatcaaaaa
gaaagaaaagtaggtcaagcaaagaagactcataaaacctctaattctacaaagactaaa
agaaattctaaaaggaagtaa
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