Helicobacter apodemus: CDV25_01755
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Entry
CDV25_01755 CDS
T05516
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
had
Helicobacter apodemus
Pathway
had03030
DNA replication
had03430
Mismatch repair
had03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
had00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CDV25_01755
03430 Mismatch repair
CDV25_01755
03440 Homologous recombination
CDV25_01755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
had03032
]
CDV25_01755
03400 DNA repair and recombination proteins [BR:
had03400
]
CDV25_01755
Enzymes [BR:
had01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CDV25_01755
DNA replication proteins [BR:
had03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CDV25_01755
DNA repair and recombination proteins [BR:
had03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CDV25_01755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AWI33625
UniProt:
A0A2U8FDZ9
LinkDB
All DBs
Position
complement(367450..370968)
Genome browser
AA seq
1172 aa
AA seq
DB search
MSKTEIQNSNTTLEGFTHLHLHTEYSLLDGLNKIKTLAKCIKELGMNSVAVTDHGNMFGA
IEFYKTMKSEGIKPILGMEAYLHNAEEIGDKSNQRFHLCLYAKDLEGYKNLMYLSSQACL
YGFHMKPRISKKMLREYSKGLICSSACLNGEVQWHLNLKKEDNKGRKGYERAKEVALEYQ
DIFGEDFYLELMRHGIEEQQLIDTQIIQISQETGIKIIATNDTHYTKQSDSTAQEVAFCI
GFGKDFNDPNRMRHTVQEFYIKSPEQMAALYADIPEALANTQEIANKCNLELNLGNPTPP
TFKFTKEYSKQEGLDCIGDSEYFTHKCKEGLKKRLEKIPKEKHQIYKERLEHEINVINAM
KFPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPLKYDLLFERFLNPE
RVSMPDIDMDFCQSRRGEILDYVTEKYGRHNVAQVITFGMMKAKAVIRDVARVMGMPYGE
ADSMAKLIPKELDITLQKAYEKEPKINELIQKNPLAKKVWEFALILENTKRNPGTHAAAV
VIDSEQELWNKAPLYCSTRDGIIATQYSMKYLEDVDLIKFDFLGLKTLTLIDNSLKLIKN
RFEKEIDFLEANMDDQKVYETLQDGNTLGVFQIESSMFQGINKRLKPNTFEDIIAIIALG
RPGPMESGMVDDFIDRKHGRKPISYMFAELEPILKPTYGTIVYQEQVMQIVQKIGGFSLG
EADLIRRAMGKKDAQIMEDNKSKFAQGAQKQGFDRVKAEELWELIVKFAGYGFNKSHSAA
YAMITFQTAYLKTYYPKEFMAALLTSEKNDTDKVVEYIEEAKKMNIQVSPPNLQKSELEF
SVADIDGESNILFGLGAIKGAGEVAINIILEERKKNGEFKDLKDFLKRIDSQKVNKKALE
SFIRSGAMDCFGYTRKTLLEQIETITEASKSAQLAKKVAENSLFGDSEELMAVDINLIDK
EEYSLKEILELEKESLGFYASGHPLDEYKEAIKKLHCAFTNQIQDIAENSSILLVGKIED
IISKFSKSGKRYGILKLQDLYGSVELTIFEQTLSKLELWDREKPVVVKCTVQEQEETKKL
KADKILHLEEAHNEKVEFAMQKADTSDPLILLLDTQSNENTIIILREAALKHKGKRELRI
RYQTKTQELEMISSFYVHSQIKEELKELQWVG
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacagaaatacaaaattctaacacaacgttagagggttttacacatctacat
ttacacacagaatattctttattagatgggttaaataaaatcaaaacattagcaaaatgt
attaaagaattaggaatgaatagcgttgcagttacagatcacggaaatatgtttggtgct
attgaattttataaaacaatgaaaagcgagggtattaaacctattttaggaatggaagct
tatttgcacaatgccgaggaaataggcgataagagcaaccaacgttttcatttatgcctt
tatgcaaaagatttagagggttataagaatctaatgtatttaagctctcaagcttgtttg
tatggctttcatatgaagccacgtattagcaaaaaaatgctaagggagtatagcaaaggc
ttaatttgctcttcagcttgtttaaatggtgaagtgcaatggcatttaaatcttaaaaaa
gaggataacaaaggaagaaaaggctatgaaagagctaaagaagtagctttagagtatcaa
gatatttttggggaggatttttatttagaacttatgaggcacggtattgaagagcaacaa
ctcattgatacacaaattattcaaatttctcaagaaacagggattaaaattatcgctacc
aatgatacacattacactaaacaaagcgattctacagctcaagaggttgcattttgtatt
ggttttggcaaagactttaatgatcctaatcgtatgcggcataccgtgcaagagttttat
attaaaagccccgagcaaatggcggctctttatgcagatattccagaagcccttgcaaat
acgcaagaaattgctaacaaatgtaatttagaattaaatttagggaatccaactccacct
acttttaaatttactaaagaatattctaaacaagaagggttagattgtatcggagatagt
gagtattttacccataaatgcaaagagggtttaaagaaaagattagaaaaaatccctaaa
gaaaaacaccaaatatataaagaacgtttagaacacgaaataaatgttattaatgctatg
aaattcccgggatatatgctaattgtttgggattttgtgcgagctgctaaagagagggga
atccctgtaggacctggtagaggaagtgctgcagggagcttagttgccttttgcttagaa
attactaatattgatcctttaaaatatgatttactttttgagagatttttaaatcccgaa
cgcgtaagtatgcctgatattgatatggatttttgccaaagcagacgcggagagatttta
gattatgtaacagaaaaatatgggcggcataatgtagcccaagttattacttttggtatg
atgaaagcaaaagcggttattagagatgtagcaagggtgatgggtatgccatatggcgaa
gcagattctatggcaaaactcatccctaaagaattagatattacactacaaaaagcttat
gaaaaagaaccaaaaattaatgaattaatccaaaagaatcctttagcaaaaaaggtatgg
gaatttgccctaatcttagaaaacactaaacgcaatcccggaactcacgctgctgctgtt
gtcatagattctgagcaagaactttggaataaagcccctttatattgttctacacgtgat
ggtatcatcgcaacgcaatattctatgaaatacttagaagatgtagatctaataaaattt
gactttttaggcttaaagactttaacacttattgataattctttaaaacttattaaaaat
agatttgaaaaagaaattgactttttagaagcaaatatggatgatcaaaaggtttatgag
actttacaagatggtaacactttgggtgtttttcaaatagaatcaagtatgtttcaaggc
attaataaacgattaaagcctaatacttttgaagatattatagctattattgctttgggg
cgtcctggtcctatggaatctggaatggtagatgattttattgatagaaagcacggcaga
aaacctatttcttatatgtttgcagaactagaacccattttaaaacctacttatggaacc
attgtctatcaagaacaagttatgcaaattgtgcaaaaaattggtggctttagcttagga
gaggcagacttaatacgaagagcaatgggaaaaaaagatgcccaaattatggaagataat
aaaagcaaatttgcacaaggagcacaaaaacaaggatttgacagggttaaagccgaagaa
ctttgggaattaattgttaaatttgctggttatggatttaataaatcacattccgctgct
tatgcgatgattacttttcaaactgcctatttaaaaacttattatccaaaagaatttatg
gcagccttattaacttcagaaaagaatgataccgataaagttgtagaatatattgaagag
gctaaaaagatgaatattcaagtctccccacccaatctacaaaaatctgaattagaattt
agtgttgcagatattgatggtgagagtaatatcttatttggtttaggtgctattaaagga
gcaggtgaagttgctattaatatcattttagaggagagaaaaaagaatggagagtttaaa
gatttaaaagattttttaaaaaggattgattcccaaaaggttaataaaaaagctttagaa
tcttttattagaagtggggctatggattgttttggatatacgagaaaaacactcttagag
caaatagagactataacagaagcttcaaaatctgcccaactcgctaaaaaagttgctgaa
aattcactttttggagatagtgaggaattaatggcagttgatattaatctaatagataaa
gaggaatattcccttaaagaaatcttagaacttgaaaaagagagcttagggttttatgct
tcaggacatcctcttgatgaatacaaagaggctattaaaaagcttcattgtgcttttacg
aatcaaatccaagatattgcagagaatagcagtattttgttagtgggtaaaattgaagat
attattagtaaattttcaaaaagtggcaaacgttatggaatcttaaagcttcaagatctc
tatggaagtgtagagcttactatttttgaacaaaccttaagtaagcttgaactatgggat
agggaaaagcccgttgtggttaaatgcacagtgcaagaacaagaagaaaccaaaaaactt
aaagccgataaaattttgcatttagaagaggcacataatgaaaaggttgaatttgctatg
caaaaggctgataccagtgatcctttaattctccttttagatacgcaaagtaatgaaaat
actattatcattttacgggaagctgctcttaagcataaaggaaaaagagagcttaggatt
cgttaccaaaccaaaacacaagaattagaaatgataagctctttttatgtgcatagtcag
attaaagaggaattaaaagaattacaatgggtgggttaa
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