Helicobacter apodemus: CDV25_01760
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Entry
CDV25_01760 CDS
T05516
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
had
Helicobacter apodemus
Pathway
had02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
had00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CDV25_01760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
had03021
]
CDV25_01760
Transcription machinery [BR:
had03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CDV25_01760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
Sigma70_r4_2
RTX_C
HTH_11
Motif
Other DBs
NCBI-ProteinID:
AWI33626
UniProt:
A0A2U8FBW9
LinkDB
All DBs
Position
complement(371009..372859)
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AA seq
616 aa
AA seq
DB search
MSAKNVNQQLDELFKNTTKYISYEKVAQVLGKLPTAAQAKRVQELAKKYNKQLMSASEVA
KLLNQDEAKKIKEEKKRLLDEELEEEFDFMKERELLEWSRSDSPVRMYLREMGQIQLLTR
EDEVELSKNIELGENIILDAICSVPYLIDFILDYKEALINRERRVKELFKSFDDEEAEES
EEEEEEEIEEGEEVGEAKKPISKKDQKRIENVLASFKALEKAKKDWLKTWEQSNEKKSDN
DMLFLLILAHKKQFLKEKLLDLGPTSKLINELVKAMENTIKSDEGFDRELKRLEYRLPLF
NDLLLNNHRKILENITQMSKAEITASVPETTMVSTYMEIKKLFQTKAASEGSFDLEPEKL
KQILEQIKRGKDIADKAKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDK
FEYKKGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKIMRKFLQEEGKEP
DIEKIAEEVGLPVDKVKNVIKITKEPISLESPIGNGEDGKFGDFVEDKTLAGPMEQILKE
DLKSQIDDVLDQLNEREKAVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKK
LKHPKVGRKLKNYIED
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgaaaaatgttaatcaacagcttgatgagttatttaaaaatacaacaaaatac
atttcttatgaaaaggttgcacaagtcttaggtaaattaccaacagctgctcaagcaaaa
agagtgcaggaattagctaaaaaatataataagcaattaatgtctgcttcagaagttgca
aaactccttaatcaagatgaagcaaagaagataaaagaagaaaaaaaacgacttttagat
gaggaattagaagaagaatttgattttatgaaagagcgagaactattagaatggagtcgt
agtgatagtccagtaagaatgtatttaagagaaatggggcagattcagcttttaacgcgt
gaggacgaagtagagcttagtaaaaacatagaattgggtgagaatattattttagatgcg
atttgctctgtgccttatttgattgattttatcttagactataaagaagccttaattaat
cgggaaagaagagttaaagagctttttaaaagctttgatgatgaagaagcagaagagagt
gaagaggaggaagaagaagagatagaagagggtgaagaagttggagaggcaaaaaaacct
attagtaaaaaagatcaaaaaagaattgaaaatgttttagcgagctttaaagctttggag
aaagctaagaaagattggttaaaaacttgggagcaaagcaatgagaaaaaaagcgataat
gatatgctttttctacttattttagcccataaaaaacaattcctaaaagaaaaattatta
gatttaggtcctactagtaaattgattaatgagcttgtgaaggctatggagaatactata
aaaagcgatgagggctttgatagggaattgaaacgtttagaataccgcttaccccttttt
aatgatttattgcttaataaccataggaaaatcttagagaatattacacaaatgagtaaa
gcagaaattaccgcatctgtgccagagactacaatggtatctacttatatggagataaaa
aaactctttcaaactaaagcagccagtgaggggagctttgatttagagccagaaaaactc
aagcagattttagaacaaattaaacgtggaaaagatatagccgataaagcaaagacaaaa
atggcaaagtctaatttgcgtcttgtggtaagtatcgctaaacgttacactaatcgtgga
ttgcctttcttagatttaattcaagaggggaatatcgggcttatgaaagctgtcgataaa
tttgaatataaaaaaggttataaattttccacttatgcaacttggtggattaggcaagcg
atttcaagagcaattgccgatcaggcaaggactattaggatacctattcatatgattgaa
accattaatcgtatcaataagattatgcggaaattcttgcaagaggagggtaaagagcca
gacattgaaaaaatagcagaagaagttgggcttcctgtagataaggttaaaaatgttatt
aaaatcaccaaagaacccattagtcttgaatcccctattggcaatggagaggatggaaaa
ttcggagattttgttgaggataagactttagcaggacctatggagcagattttaaaagag
gatttaaagtctcaaattgatgatgttttagaccagctcaatgaaagggaaaaagctgtt
attcgtatgagatttggacttttagaggatgaatcagatagaaccttagaagaaattggg
aaagaattaaatgtaacaagagagagggtaaggcaaatagaatctagtgcgataaaaaaa
cttaaacacccaaaagtagggagaaaactcaaaaattatattgaggattaa
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