Helicobacter apodemus: CDV25_06770
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Entry
CDV25_06770 CDS
T05516
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
had
Helicobacter apodemus
Pathway
had03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
had00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CDV25_06770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
had03400
]
CDV25_06770
DNA repair and recombination proteins [BR:
had03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CDV25_06770
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CDV25_06770
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
UVR
ResIII
DEAD
AAA_30
T2SSE
UB2H
SWI2_SNF2
Microtub_bd
DUF87
Motif
Other DBs
NCBI-ProteinID:
AWI34497
UniProt:
A0A2U8FFC4
LinkDB
All DBs
Position
complement(1374748..1376724)
Genome browser
AA seq
658 aa
AA seq
DB search
MQKFILNSSYSPAGDQPQAIETLSGFIKSGSMYQTLIGVTGSGKTFTMAQIIQKIQMPTL
IMTHNKTLAAQLFSEFKGFFPKNHVEYFISHFDYYQPEAYIPRQDLFIEKDSSINEELER
LRLSATTSLLAYDDSIVVASVSANYGLGNPKEYLEMIEKFEVGSSYIQKSLLLRLVDMGY
KRNDNFFDRGDFRVNGEVIDIYPAYSEDEVVRLEFFGDELESITFLDSIDKKPLKKVESF
VLYAANPFIVGADRLNIALKGIEEELHKRLSFFKKEGRMVEYERLKSRTEFDLEMIQATG
ICKGIENYARHLTGKKPGETPYSLLDYFEQKNKPYLLIVDESHVSLPQFGGMYAGDRSRK
EVLVEYGFRLPSALDNRPLKYEEFIQKAPHFLFVSATPASRELELSKNHIAEQLIRPTGL
LDPLYEVLECDNQVEILYDEAKKVVAKGERVLVTALTKKMAEELTKYYVDLGLKVRYMHS
DIDAIERNQIIRALRLGEFDILVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQT
MGRAARNVNGRVLLFANKITDSMKKAMEVTDYRRNKQEAFNKEHNIVPQSVSRKLDEDLK
MQDLGMLYERTKNKEKMPKAEREKMVKELTKKMQQAAKALEFEEAARLRDEIAKLRKI
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaatttattcttaattcttcttattccccagcaggagaccaaccccaagccata
gaaactttaagtggttttataaaatccggaagtatgtatcaaacgcttattggtgttaca
ggaagtggcaagacttttactatggcacagattattcaaaagattcaaatgccaacgctt
attatgacacataataaaaccctagcagcacagctttttagcgagtttaaagggtttttt
cctaaaaatcatgtggagtattttatctctcattttgattattaccaaccagaggcttat
ataccgcgtcaagatttatttattgaaaaggattcaagtatcaatgaggaattagagcga
ttaagactttctgctaccacttcgcttttggcgtatgatgatagtatcgttgtagcctct
gtttcggcaaattatggtttggggaatcctaaagaatatttagaaatgatagaaaaattt
gaggttggaagtagctatattcaaaaatctttacttttgcggcttgtggatatggggtat
aaacgcaatgataatttttttgataggggagattttcgtgtcaatggggaggttattgat
atttatcctgcttatagtgaagatgaggtcgtgcgtttagagttttttggcgatgaatta
gaatctattacttttttggatagtatcgataaaaagcccttaaaaaaagtagaatctttt
gtgctttatgcggcaaatccttttattgtgggtgcggatagattgaatattgctctaaag
gggattgaggaggaattacataaacgtttgagcttttttaaaaaagagggtaggatggtt
gaatatgagaggctaaaaagtcgcacagagtttgatttagagatgatacaagccacaggg
atttgtaaaggaatagaaaattatgctaggcatctaacgggtaaaaagcccggtgaaact
ccttattctcttttggattatttcgagcaaaaaaataaaccttatttactcattgtcgat
gaatctcatgtaagcttaccgcagtttgggggtatgtatgctggagataggagtcgtaaa
gaagtgcttgtagaatatggctttagactgcctagtgctttggataatcgtccgcttaag
tatgaagagtttatacaaaaagccccgcattttctttttgtctctgctactcccgcttca
agggagctagaattaagtaaaaatcatattgccgagcagcttattcgcccaacaggattg
ttagatcctctttatgaggttttagaatgcgataatcaagtggagattctttatgatgaa
gctaaaaaggttgttgcaaagggggaacgcgtgcttgtaacggctttgacaaagaaaatg
gcagaggaactaactaaatattatgtggatttaggattaaaagtgcgttatatgcattct
gatattgatgctattgaacgtaaccaaattattagggctttaaggcttggagagtttgat
attttagtgggtattaatcttttgcgtgaggggttagatttgccagaggtttctttagtt
gctattttagacgctgataaagaggggtttttaaggagcgagacaagccttatccaaaca
atggggagagctgctaggaatgtcaatgggagagttttgctctttgctaacaaaatcact
gattctatgaaaaaagcaatggaggtaacagattataggaggaataagcaagaggctttt
aacaaagagcataatattgtgcctcaaagtgtttcaagaaaacttgatgaggatttgaaa
atgcaggatttaggaatgctttatgaaagaactaaaaataaagagaaaatgccaaaggct
gaaagggagaaaatggttaaagagctgactaaaaaaatgcaacaagccgcaaaagcttta
gagtttgaagaggctgctaggttgcgtgatgaaatagcaaaattaagaaaaatttag
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