Helicobacter apodemus: CDV25_09660
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Entry
CDV25_09660 CDS
T05516
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
had
Helicobacter apodemus
Pathway
had03410
Base excision repair
had03430
Mismatch repair
had03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
had00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CDV25_09660 (recJ)
03430 Mismatch repair
CDV25_09660 (recJ)
03440 Homologous recombination
CDV25_09660 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
had03400
]
CDV25_09660 (recJ)
DNA repair and recombination proteins [BR:
had03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CDV25_09660 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CDV25_09660 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CDV25_09660 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AWI34995
UniProt:
A0A2U8FHD8
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All DBs
Position
1987194..1988789
Genome browser
AA seq
531 aa
AA seq
DB search
MQNLINKTLDKASIKTLLKERFENQITTLKEIPKPATLDNLTLIAQRIKAAILEQKKIAI
VGDYDVDGVVSCAILQEFFAKIPYPLEIVIPNRFSDGYGISKALIENLDVQMIITVDNGI
NATEVADFCKQKGIELIITDHHIPAKELPNALICNPKLSAEFIEKEICGACVAWYLCGSI
KEAMGLEIPMVEFLDYLALAIVSDVMPLRGINWVLLKKGLSVFKESKRVAFVLLKEYFKK
YNIDSRLIGYYVVPLLNAPGRMQSAMRSYEFLIQKDSKKAFVLLEQLLTFNAKRKTLQST
MYLEAKEQFISQRDYLSLPFIVVYKANWNEGVIGIVAAMLYEEFLKPAIVLTKEGHLKGS
MRGVDCMGILENYRQFLENFGGHSGAAGIVLKEENLEGFKKALIQSQQIGDTQEKNLLAQ
RFKGVLGNLSFKEVDEELFLLLQNFEPYGYGNALPRFLTQARVREVRIFGDYHSSILLEN
EGITKEAVMFNRDLRDLKNQEVLCSYSLYKSSFHQRLCLQLAEIAPMKAFE
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatctcataaataaaacccttgataaagcctccattaaaaccctgctaaaagaa
cgttttgaaaatcaaatcactaccttaaaagagataccaaaacccgcaactttagataat
ttaacacttatcgcacagaggataaaagcagcgattttagagcaaaagaaaatagccatt
gttggggattatgatgttgatggcgtagtttcttgtgcgattttacaagagttttttgca
aagattccttatcctttagagattgttatccctaatcgctttagcgatggttatggaatc
tctaaagccttgattgaaaacttagatgtgcagatgattatcacggtggataatgggatt
aatgccacagaagtagcggatttttgtaagcaaaagggtattgagcttattattactgac
catcatatccctgctaaggagcttcctaatgcacttatttgtaaccctaagctttctgct
gaatttatagaaaaagagatttgtggggcttgtgtggcttggtatttatgcgggagtatc
aaggaggctatgggcttagaaattcctatggtggagtttttagattacctagctttagca
attgtgagtgatgtaatgcctcttaggggtataaattgggtattacttaaaaagggttta
agtgtttttaaagagagtaaaagggtagcttttgtgctattaaaagagtattttaaaaaa
tataatatagattctaggcttattggttattatgtcgttcctttactcaatgccccaggg
agaatgcaaagtgctatgcgatcttatgagtttcttatccaaaaagattctaaaaaggct
tttgtgctattagagcaattattaacgtttaatgctaagaggaaaaccttgcaaagcact
atgtatttagaagcaaaagagcagtttatctcccagagggattatttgtctttgcctttt
attgttgtttataaggctaattggaatgagggggttattgggattgtagcggctatgctt
tatgaggagtttttaaaacccgctattgttttaactaaggaggggcatttaaaagggagt
atgagaggggtagattgtatggggattttagaaaattatcggcagtttttagagaacttt
ggtgggcatagtggagcagcggggattgtcttgaaagaggagaatttagagggttttaaa
aaagctttaatacagagccaacaaataggtgacactcaagaaaaaaacttgctagcacag
aggtttaaaggggtcttagggaatttatcttttaaagaggttgatgaagaattatttttg
cttttgcaaaactttgagccttatggctatggtaatgctttgccaagattcttaacacaa
gctagagttagggaggtgcggatatttggggattaccatagctctatacttttagagaat
gagggaattactaaagaagcggtaatgtttaatagggatttgcgtgatttaaaaaatcaa
gaagtgctatgtagttatagtctttataaaagtagctttcatcaaaggctttgtttgcaa
ttagcagagattgcccctatgaaagcttttgagtaa
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