Halomonas sp. DN3: NKF27_02340
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Entry
NKF27_02340 CDS
T10930
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
hadn Halomonas sp. DN3
Pathway
hadn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hadn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
NKF27_02340 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hadn03400
]
NKF27_02340 (sbcB)
Enzymes [BR:
hadn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
NKF27_02340 (sbcB)
DNA repair and recombination proteins [BR:
hadn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
NKF27_02340 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NKF27_02340 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NKF27_02340 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
USZ50376
LinkDB
All DBs
Position
509012..510502
Genome browser
AA seq
496 aa
AA seq
DB search
MAQPKAAPLTFLWHDYETFGADPRRDRPSQFAAIRTDAEFNEIGEPVELFCKPADDALPH
PMACLITGITPQQARRNGVPEAEFAGAIVDEMSVAGTCAVGYNSLRFDDEVSRHLFYRNL
IDPYAREWQNGNSRWDLIDVVRAFHALRPEGIEWPRREDGSPSFRLEDLTAANGIEHAGA
HDALADVRATIALARLLRGANANLFDYLLSLRAKREVRKRLDTTQRKPVVHISRRYPASR
ACGSLVMPLAEHPTNPNGVIVYDLSLDPADMLSLSPQEIRARVFVSNDDLAEGESRIPLK
VVHINKCPVIFPPSALKDVSGPHQGEYGEIVARMGLEMDACRGHYQRLAKDPDIVAKVQE
VFAEPPPEPPRDPDLMLYSGGFFSPADRQQMERVRAMDPWDLVDASFAFQDPRLEEMLFR
YRARSYPDTLTGEEQARWETFRWERMNDSALASLTLKDFAREIERLNQTWLSDRERQILE
EMVMFVESIMPAQAFG
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagccgaaagccgctccgctgacctttctgtggcacgactacgagacctttggt
gccgatcctcggcgcgatcgtccctcgcagttcgcggccatccgtaccgacgccgagttc
aacgagattggcgagccggtggagctgttctgcaagcccgccgatgatgccttgccgcac
cccatggcctgcctgatcaccggtattacgccccagcaggcgaggcgcaacggtgtgccc
gaagccgagttcgccggcgccatcgtcgacgagatgagcgtcgccgggacctgtgcggtg
ggctacaacagcctgcgcttcgacgatgaggtcagtcgtcacctgttttaccgcaacctg
atcgacccctatgcacgggagtggcagaacggcaattcgcgctgggatctgatcgacgtg
gtgcgcgcctttcacgccttgaggccagagggcatcgagtggccaaggcgcgaggacggc
agtcccagctttcgcctggaagacctgaccgcggccaacggcatcgagcatgccggcgcc
cacgacgccctggccgatgtacgcgctaccatcgccctggcgcgactgttgcgtggcgcc
aatgccaacctgttcgactacctgctgtcgctcagggccaagcgtgaggtgcgtaaacgc
ctggatacgacccagcgcaagccggtggtgcatatctcccggcgctatccggccagccgt
gcctgcggctctctggtgatgcccctggccgaacacccgaccaatcccaacggcgtcatc
gtctacgacctgtcgctggaccctgccgacatgctcagtctctcgccccaggagattcgt
gctcgggtattcgtcagcaatgacgacctggctgagggcgaaagccggattccgctgaag
gtggtgcacatcaacaagtgtccggtgatctttccgcccagtgcgctcaaggatgtgtcg
gggccccatcagggcgagtatggcgagatcgtggcgcgcatggggctcgagatggacgcc
tgtcgcggtcactaccagcggctggccaaggaccccgatatcgtcgccaaggtgcaggag
gtgttcgccgagccaccgccggagccgccgagggatccggacctgatgctctactccggc
gggttcttctcgcctgccgaccgccagcagatggagcgcgtgcgtgccatggatccctgg
gatctggtcgacgccagctttgccttccaggacccgcgcctggaggagatgctgtttcgc
taccgcgcccgcagctatccggacaccctgaccggcgaggagcaggcgcgctgggagacc
ttccggtgggagcggatgaacgactcggcgctggcgagcctgacgctaaaggacttcgcg
cgtgaaatcgaacgtctgaaccagacctggctgagcgatcgcgaacgccagatcctcgag
gagatggtgatgtttgtggagtcgatcatgcccgcccaggcgttcggctag
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