Halomonas sp. DN3: NKF27_02425
Help
Entry
NKF27_02425 CDS
T10930
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hadn Halomonas sp. DN3
Pathway
hadn03410
Base excision repair
hadn03430
Mismatch repair
hadn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hadn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NKF27_02425 (recJ)
03430 Mismatch repair
NKF27_02425 (recJ)
03440 Homologous recombination
NKF27_02425 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hadn03400
]
NKF27_02425 (recJ)
DNA repair and recombination proteins [BR:
hadn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NKF27_02425 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NKF27_02425 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NKF27_02425 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
USZ50392
LinkDB
All DBs
Position
528006..529817
Genome browser
AA seq
603 aa
AA seq
DB search
MSHSSPANAGSSEHAEPRPRIEPRPRNERLYRQGLEAGLSELQARLLAGRLPDYQGELGP
LVDPSLRHLVHPERLADAPRAAERIAQAVAEGEHIGILTDYDVDGITSHVVIRRTLNELF
GVPESRLHSLIGHRIHDGYGISLPLVERTLKLTPRPSLVITADCGSSDEARIARLKAAGI
DVVVSDHHALPQEGPPPSAYATVNPTRADCDYPDATIAGCMVAWLLMSLTRQVLIEQAVL
SPSTPKLSPWLSYVALGTVADCVSLGGSAINRAVVRHGLALINRMGEPCWRVMAERLGAD
SVPFDAETLGFQMGPRINARSRLDDPYAALHFMLAGDDGVARRHLETLDADNQSRKAIEA
DMVAEARLLARRALDADEPVVIVYLENGHPGVQGIVASRLVQAYGRPTLVLTPAAEAGML
TGSGRSVEALHLRDALQRAHDLAPEALTRFGGHRGAAGVGVVQERLDDFRQALITAVSEQ
LGDLELVPRLYTDGELGEHQLSLETLAEIEGLGPFGREFEAPLFEGRFLVERLKPVGDGS
HLTLELSCRGLTLKAIWFRCLTPGQLPDFDVGATLHCAYKLNRNRFRGRESLQLMVEHAE
PVE
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgtcccactcttctccggcaaatgccggctcgagcgagcatgccgagccgcgtccgcgt
atcgaaccgcgtcctcgcaacgaaaggctgtatcggcagggactcgaggccgggctgtcg
gagcttcaggcccggctgctggccggacgcctgcccgactaccagggcgaactcggcccg
ctggtcgatccgagtctgcgtcatctggtccatcccgagcgtctggccgatgcgccgaga
gcggccgagcgcatcgcccaggcggtggccgagggcgagcacatcggcatcctcaccgat
tacgacgtggacggcatcacctcccacgtggtgatccggcgcaccctgaacgaactgttc
ggggtgccggagtcacgtctgcacagtctgatcggtcaccgtattcatgacggctatggc
atcagtctgccgttggtggagcgcaccctgaagctgacgccgcggcccagcctggtgatt
accgccgactgcggcagcagcgacgaggcgcgtatcgccaggctcaaggcggcgggaatc
gacgtggtggtcagcgatcaccacgctctgccccaggaagggccgccgccctcggcctat
gccacggtcaacccgacccgagccgactgcgactacccggacgccaccatcgccggctgc
atggtggcctggctgttgatgtcgctgacccgccaggtactgatcgaacaggcggtactg
tcgccgtccacgcccaagctctcgccctggctgtcctacgtggcgctgggcaccgtggcc
gactgtgtgtcactgggtggcagcgccatcaaccgggcggtggtgcgccacggtctggcg
ctgatcaatcgcatgggcgagccctgctggcgggtaatggcggagcgcctgggcgccgac
agcgtgcccttcgacgccgagaccctgggcttccagatggggccgagaatcaacgcccgt
tcgcgcctcgacgatccctacgcggcgcttcacttcatgctcgccggggatgacggggtg
gcgcggcgtcacctggagaccctggacgccgacaaccagtcgcgcaaggccatcgaagcc
gacatggtcgccgaggccaggctgctggcccgccgggcgctggacgccgacgagccggtg
gtcatcgtctatctggagaacggccatccgggggttcagggcatcgtcgcctcgcgcctg
gtgcaggcctacggacggccgaccctggtgctgacccccgccgccgaggccggcatgctg
accggctccggacgctcggtggaggcgctgcacctgcgcgatgctctgcagcgcgcccac
gacctggcccccgaggcgcttacgcgtttcggcggccaccggggcgccgccggcgtcggc
gtggtacaggaacgtctcgacgacttccgccaggcgctgatcaccgcggtcagcgaacag
ctcggcgatctggaactggtgcccaggctctacaccgacggtgaactcggcgagcatcag
ctaagcctcgagaccctggccgagatcgagggccttggccccttcggccgcgagttcgag
gcgccgctgttcgaggggcgctttctggtggagcggctcaagccggtgggtgacggcagt
cacctgaccctggagctgtcctgtcgcggactgaccctgaaggccatctggtttcgctgc
ctgaccccgggccagttgccggacttcgacgtgggcgccaccctccactgcgcctacaag
ctcaatcgcaaccgcttccgcggacgcgagtcactgcagctgatggtggagcacgcagag
cccgttgaataa
DBGET
integrated database retrieval system
