Halomonas sp. DN3: NKF27_03800
Help
Entry
NKF27_03800 CDS
T10930
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hadn Halomonas sp. DN3
Pathway
hadn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hadn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NKF27_03800 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hadn03021
]
NKF27_03800 (rpoD)
Transcription machinery [BR:
hadn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NKF27_03800 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
WHD
Motif
Other DBs
NCBI-ProteinID:
USZ50636
LinkDB
All DBs
Position
823468..825303
Genome browser
AA seq
611 aa
AA seq
DB search
MAGNAQQQSRLKELIARGKEQGFLTYAEVNDHLPEDIADPDQVEDIIGMINDMGINVVEE
APDEDTLMMSDHSTDESAAEEAVAALAAVESDVGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGTREVMSALAYVPGAVESILDAYDATQDEEAPGRLSDLFSGFIDPDEGIPGVA
EAEVPEVDEQAASDDDEDGEEEEDDSGGGPDPEEARARFGQIREQSQAANAAIETHGRQS
REAQEELARLAELFSPIKLVPKHFERLVGQVRISVEQVRAQEKTVMQLLVKQAKVPRKAF
IKAFPSNESRLDWLDDFMADNARYADRLAPLKADVQRAQRKIAFEEEMIQLPVSEVKEVN
RRLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEE
LGERLEMPEDKVRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTMVLPIDSATGEGLVE
ATRNVLGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPT
RSEPLRSFLDE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaatgcgcagcagcagtcacgtctgaaggagttgatcgcgcgcggcaaggaa
cagggcttcctgacctatgccgaggtcaacgaccaccttcccgaagatatcgccgacccc
gaccaggtggaagatatcatcggcatgatcaatgacatgggtattaacgtcgtcgaggaa
gctcccgacgaagataccctgatgatgtcggatcactcaaccgatgaatccgcggctgaa
gaggcagtggcggccctggccgcggtggaaagcgatgtcggtcgcaccacggacccggtg
cgcatgtacatgcgcgagatgggcaccgtcgagctgttgactcgtgaaggtgagatcgag
atcgccaagcgcatcgaagaaggcacccgtgaagtcatgtcggcgctggcctatgtgccg
ggtgccgtcgagtcgatcctcgatgcctacgatgccacccaggacgaggaagcgccggga
cgtctctctgacctgttttccggcttcatcgaccccgacgaaggcatccccggcgtggcc
gaggctgaagtgcccgaggtggacgagcaggccgccagcgacgacgacgaagacggtgag
gaagaagaggacgactccggtggtggcccggatccggaagaggcccgtgcgcgtttcggg
cagattcgcgagcagagccaggccgccaacgccgccatcgagacccacggtcgtcagtcc
cgtgaggctcaggaagagctggcacgtctggccgagctgttctctccgatcaagctggtg
cccaagcacttcgaacgtctggtcggacaggtccgcatcagcgtcgagcaggtgcgtgcc
caggaaaagacggtgatgcagctcctggtgaagcaggccaaggtgccgcgcaaggccttt
atcaaggccttcccgagcaacgagtcccggctcgactggctcgacgacttcatggccgac
aacgcccgctacgccgatcgtctcgcgccgctcaaggccgacgttcagcgtgcccagcgc
aagatcgccttcgaggaggagatgatccagctgccggtgagcgaggtgaaggaggtcaat
cgtcgcctgtccatcggtgaggccaaggctcgccgtgccaagaaggagatggtcgaggcc
aacctgcgtctggtcatctccatcgccaagaagtacaccaatcgcggcctgcagttcctc
gacctgatccaggaaggcaacatcggcctgatgaaggcggtggacaagttcgaatatcgt
cgcggctacaagttctcgacctacgccacctggtggattcgtcaggcgatcacgcgttcc
atcgccgaccaggcgcgcaccatccgtattccggtgcacatgatcgagaccatcaacaag
ctcaaccgcgtttcgcggcagatgctgcaggagatggggcgcgagccgacgcctgaagaa
ctgggcgagcgtctcgagatgccggaagacaaggtgcgcaaggtgctcaagatcgccaag
gagccgatctccatggagacgccgatcggtgacgacgacgattcgcacctgggtgacttc
atcgaagactccaccatggtgctgccgatcgactcggccaccggcgagggcctcgtcgaa
gccacgcgcaacgtgctcggtggcctgaccgcccgcgaagccaaggtgctgcggatgcgc
ttcggtatcgacatgaacaccgaccacaccctcgaggaggtcggcaagcagtttgacgtg
acccgcgaacgtatccgtcagatcgaggccaaggcgctgcgcaagttgcgccatccgacc
cgctccgaaccgctgcgctccttcctcgacgagtaa
DBGET
integrated database retrieval system
