KEGG   Halomonas sp. DN3: NKF27_03860
Entry
NKF27_03860       CDS       T10930                                 
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
  KO
K11900  type VI secretion system protein ImpC
Organism
hadn  Halomonas sp. DN3
Brite
KEGG Orthology (KO) [BR:hadn00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:hadn02044]
    NKF27_03860 (tssC)
Secretion system [BR:hadn02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   NKF27_03860 (tssC)
SSDB
Motif
Pfam: VipB VipB_2
Other DBs
NCBI-ProteinID: USZ50648
LinkDB
Position
836663..838153
AA seq 496 aa
MSDNEIQAQPEQSTVFAPESSLLESIISESRVARSENERSRARDLIEELVAQVLEGEVLP
SKDLIAVLDARIAEIDAMLSEQMNEIMHAGEFQQLESSWRGLKYLVDQSETGGNMKIQVL
NATRKDLVRDMKSAPEFDQSALFKKVYEEEYGTFGGAPFGMLIGDFEFSRSPEDIYLLEQ
VSHVAAAAHAPFISAASPELFGWDSFTEMTGPRDLSKVFDTVEYAKWKSFRNSEDARYVG
LTLPHVLGRLPYGPETAPVEEFNFVESVDGRDHNQYLWMNAAYAMGARVTDAFANYGWCV
AIRGVEGGGLVEDLPTHTFQTDDGEVALKCPTEIAITDRREKELADLGFIPLVHCKGTDY
AAFFGVQSAQKQKQYNTDVANANARLSAQLQYIFATSRIAHYMKAIMRDKVGSFASRTSV
ERYLNEWLSQYVLLDDNASQEAKAQYPLREAHVEVAEVPGKPGVYKAVTFLRPHYQLDEL
TASLRLVAELPQSSRN
NT seq 1491 nt   +upstreamnt  +downstreamnt
atgtcagacaacgaaatacaggcgcagcctgaacaaagcaccgttttcgccccggagtcc
tcgctgctggagagcatcatctccgaaagccgagtggcgcgctcggagaacgagcgctct
cgcgccagggacctgatcgaggagctggtcgcccaggtgctcgaaggcgaagtgctgccg
agcaaggacctgatcgcggtactggatgcacgcatcgccgagatcgacgccatgctctcc
gagcagatgaacgagatcatgcacgccggcgagttccagcaactcgagtcttcctggcgt
ggcttgaagtacctggtcgaccagagcgagaccggcggcaacatgaagatccaggtgctg
aacgccaccagaaaggatctcgtccgcgacatgaagtcggcgccggagtttgaccagagt
gcgctgttcaagaaggtctacgaggaagaatacggcacctttggcggcgctcccttcggc
atgctgatcggcgatttcgagttttcgcgcagtcccgaggacatctatctgctcgagcag
gtgtcccacgtggcggcagcggctcacgccccctttatctcggccgcctcaccggaattg
ttcggctgggattcgttcaccgagatgaccggaccgcgggatctttccaaggtgttcgac
accgtcgaatacgccaagtggaagtcgtttcgcaactccgaggatgctcgctacgtcggc
ctgactctgccccacgtgctgggtcgcctgccctacggccccgagaccgcgccggtggag
gagttcaacttcgtcgagagcgtcgatggccgtgaccacaaccagtacctgtggatgaac
gccgcctacgcgatgggtgcgcgggtgaccgacgccttcgccaactacggctggtgtgtg
gccattcgtggtgtcgagggtggcgggctggtggaggatctgccgactcacaccttccag
accgatgacggcgaggtggcgctcaagtgtccgaccgagatcgccatcaccgaccgacgc
gagaaggaactggcggatctggggttcattccactggtgcactgcaagggcaccgactat
gccgccttcttcggggtccagtcggcgcagaagcagaagcagtacaacaccgatgtcgcc
aacgccaatgcgcgtctgtcggcgcagttgcagtacatcttcgcgacctcgcggatcgcc
cactacatgaaggcgatcatgcgcgacaaggtcggcagctttgcttcgcgtaccagcgtc
gagcgctatctcaacgagtggctgtcgcagtacgtgctgctggatgacaacgccagccag
gaagccaaggcccagtacccgctgcgcgaggctcacgtcgaggtcgccgaggtgcccggc
aagcccggcgtctacaaggcggtgaccttcctgcgcccgcattatcagctcgatgagctg
acggcgtcactgcgcctggtggcggaactgccgcagtcttcacgcaactga

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