Halomonas sp. DN3: NKF27_05540
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Entry
NKF27_05540 CDS
T10930
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hadn Halomonas sp. DN3
Pathway
hadn03018
RNA degradation
Brite
Enzymes [BR:
hadn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NKF27_05540
Messenger RNA biogenesis [BR:
hadn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NKF27_05540
Ribosome biogenesis [BR:
hadn03009
]
Prokaryotic type
rRNA helicases
NKF27_05540
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
USZ50966
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Position
1250728..1252464
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AA seq
578 aa
AA seq
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MTSTTVASPSFGDLALLPAVLSAIETLGYETPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPILSRIELDRREPQVLVLAPTRELAQQVAVSFSKYGQNLKGLEVATLCGGQEYRE
QLSALRRGAQVVVGTPGRVIDHLDRGSLKLSGLNALVLDEADEMLRMGFIDDVKRVVADT
PENAQRVFFSATLPTEIERIVNRYLVDPVKVAIEARTTTAESIEQRLVRVDGGAKLEALS
RILEVEPVDAAIVFVRTRAACTTLMEQLSARGVNVASLSGDLDQSLRERTITRLKRAKVD
VLIATDVAARGLDVPRITHVINYDLPQDAEAYTHRIGRTGRAGRNGVAITFAGFREGRKV
GWLEQATGQKMAVMELPDEAAIRAHRDNVFHQRVIAAVTKGAEEQRALVERLVEEGYDPI
ELACAFSAMARADEAPIGRLQAPRKERNDRAPRDGKPQRRRESRGPSEGMTRYRVSVGHK
DGVKPGQLVGALANEGGIEGARIGRIDIRNGFSTVELPNGLPASILAKMARARVAGRPLE
ISEDRGGDRAERGGERSGERAPRRRRDDEAPVRRQSRA
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacgactgtcgcttcaccgtcttttggtgatctggccctgctgcctgccgtt
ctctccgccatcgagaccctgggctacgagactccctcgcccattcaggcgcagaccatt
ccagccctgctggaaggccgcgacatgctgggccaggcccagaccggcaccggcaagacc
gctgccttcgcgctccccatcttgtctcgtattgaactcgatcggcgtgagccccaggtg
ctggtgctggcgccgacccgcgagctggctcagcaggtagccgtctccttcagcaagtac
ggccagaacctcaagggtctggaagtcgccaccctgtgcggcggccaggaataccgtgag
cagctcagcgcgctgcgtcgtggcgcccaggtagtggtcggtacccccggccgcgtcatc
gatcacctggatcgtggcagcctcaagctttccggcctcaacgctctggtgctggacgaa
gccgacgagatgctgcgcatgggcttcatcgacgacgtcaagcgtgttgtcgccgataca
cccgagaacgcccagcgtgtgttcttctcggcgaccctgcccaccgagatcgagcgcatc
gtcaatcgctacctggtggatccggtcaaggtcgccatcgaggcgcgtaccaccaccgcc
gagagcatcgaacagcgcctggtgcgcgtcgatggtggcgccaagctggaagcgctgtcg
cgcatccttgaagtcgagccggtggacgccgccatcgtgttcgtgcgcacccgtgccgcc
tgtaccacgctgatggagcagctgtctgcgcgtggcgtcaacgtcgccagcctgtccggt
gatctggaccagagcctgcgcgagcgcaccatcactcgcctcaagcgcgccaaggtcgat
gtgctgatcgccaccgacgtggccgctcgtggtctcgacgtgccgcgcatcacccacgtc
atcaactatgacctgccccaggatgccgaggcttacacccaccgcatcggccgtaccggc
cgtgccggccgcaacggcgtggcgattaccttcgccggcttccgtgaaggccgcaaggta
ggttggctcgagcaggccaccggccagaagatggcggtcatggagctgcccgacgaggcc
gccattcgtgcccaccgcgacaacgtcttccatcagcgcgtgatcgccgccgtcaccaag
ggtgccgaagagcagcgtgctctggtcgagcgtctggtcgaggaaggctacgatcccatc
gagctggcctgtgccttctccgccatggcgcgcgccgacgaggcacccatcggtcgcctg
caggcgccgcgcaaggaacgcaatgaccgcgccccgcgtgacggcaagccgcagcgtcgc
cgcgagagccgtggacccagcgaaggcatgacccgctaccgcgtctccgtcggccacaag
gatggcgtcaagcctggccagctggtcggcgccctggccaacgaaggtggtatcgaaggc
gcccgtatcggccgcatcgacatccgtaacggcttctccaccgtggagctgcccaatggt
ctgccggccagcatcctggccaagatggcacgtgcccgtgtggccggtcgtccgctggaa
atcagcgaagaccgtggcggtgatcgcgctgagcgtggtggcgagcgcagcggcgagcgt
gctccccgtcgtcgtcgcgatgacgaggcgcctgtgcgtcgccagtcgcgcgcctga
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