Halomonas sp. DN3: NKF27_07445
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Entry
NKF27_07445 CDS
T10930
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hadn Halomonas sp. DN3
Brite
KEGG Orthology (KO) [BR:
hadn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hadn03019
]
NKF27_07445 (hrpA)
Enzymes [BR:
hadn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NKF27_07445 (hrpA)
Messenger RNA biogenesis [BR:
hadn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NKF27_07445 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
nSTAND3
AAA_19
T2SSE
nSTAND_NTPase5
NACHT
AAA_25
SRP54
SLFN-g3_helicase
AAA_30
PhoH
Motif
Other DBs
NCBI-ProteinID:
USZ51320
LinkDB
All DBs
Position
1682798..1686820
Genome browser
AA seq
1340 aa
AA seq
DB search
MSSSTPTAQQNADDASRLKSLTEGLEQVMLRDRPTLAKRLAGLERRRRDGKPIDRGLKEV
EHHWQRSRQTLASRQARPVTLDYPEQLPVAARRADILKALESHQVVVVAGETGSGKTTQL
PKLCLELGLGRRGLIGHTQPRRLAARSVATRLAEELQVPLGEQVGYQVRFTDQTNDDTLV
KLMTDGILLAETRQDPDLRRYDTLIIDEAHERSLNIDFLLGYLKRLLDRRPDLKVIITSA
TIDVERFSQHFASRDQDGVVRPAPVVEVSGRTYPVEVRYRPLIRDEDDEEDRTLSEGILH
AVEEIETIEREKRWFHGPRDILVFLPGEREIRETADVLRRADLKSTEILPLYARLSNAEQ
NRVFAPHSGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRAKIQRLPVEAVSQAS
ANQRKGRCGRVAEGVCIRLYDEDDFLARPEFTDPEIRRTNLASVILSMLSLKLGDIQDFP
FVDPPDSRFVTDGFKLLYELGAVDDNSRLTTLGRRLARLPIDPRLARMVLAGVEQQSLRE
VLIVVSALAVQDPRDRPSDKREAADQAHRRWQDPDSDFVALLNLWHGFEAAREELSGNRL
RRWCRDNFLNYLRLREWHDTFRQLRQLLKDMDIQVPSARPAIAAEGEDDDGQAKERKRQQ
TVAMHKALLTGLLSHLGILTENREYLGARNRKFMIHPASGLSKKSPKWVMAMELVETSKL
FARSVAKVEPQWIEPLAGHLVKRSYSEPHWEMKRAQVVAFEQVTLFGLPIVARRKFHYGP
IAPVESRELFIRRALVEGEFRTKGEFFAHNRALIDEVEDLEDRARRRDILVDEEQLFDFY
DARLPEDIVNGKGFEAWRRKAERSDPELLKFDRQALLAREADDVTGDAYPDELSIDGVRY
PLAYHFAPGAEDDGVTMTVPAAMLSQLSSSRLEWLVPGLLRDKCIALLKSLPKSIRRQVV
PIPDWVDAALEALVPGDGSLTEALGEFLRVKTGLRLSPDDWRLDQLEPHLVMNLKVVDHS
GKVLGQGRDLRALERRFEAAASQGARALAKSVESQSELSGFPEQALPESRVTSQAGIRVE
AFPALVPSSSGLTLELFDHPAKAHEAHRRGVVKAAMERLPDQVKAIERTQGLSTCALLFA
KVGSKRALTEDVVTAVFRQVVAVDPLPRSAEALEQRIQAVRQDIVPHADKLVAVLKPALE
GHLAVTKALKGNLSLSLALVYSDLKAQMQRLVYPGFVTDAGAWLEAYPRYMEAAQVRLEK
APRERMRDQMLMQTVQDFETRLETRRQAEHRGGVEDPSLVEFRWWIEELRVSLFAQQLGT
AMPVSEKRLEKRWAELTGRG
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
gtgagtagttctacgcccaccgcccagcaaaacgccgacgacgcctctcgcctgaagtct
ctgaccgaaggactggaacaggtgatgcttcgcgatcgcccgacgctggccaagcgtctg
gccggtctcgagcgtcgtcgacgcgacggcaagcccatcgaccggggactcaaggaggtc
gagcaccactggcagcgctcccgtcagaccctggcctcgcgccaggcgcgcccggtcacg
ctcgactatcccgagcagctcccggtggcggcgcggcgtgccgatatcctcaaggcactg
gagtcccatcaggtggtggtggtggccggcgaaaccggctccggcaagaccacccagctg
cccaagctgtgtctggagctggggcttggccgtcgcggtctgatcggccacacccagccg
cggcgcctggcggcgcgctcggtggcgacccgtctggcagaagaactgcaggtgccgctg
ggcgagcaggtgggttatcaggtccgcttcaccgaccagaccaacgacgacaccctggtc
aagctgatgaccgacggcatcctgctggcggagacccgccaggatccggacctgcgccgc
tacgacaccctgatcatcgacgaggcccacgaacgcagcctcaatatcgatttcctgctc
ggctacctcaagcgcctgctcgatcgccgcccggatctcaaggtcatcatcacctccgcc
accatcgatgtggagcgcttcagtcagcactttgccagccgagaccaggacggcgtcgtg
cgtcctgctccggtggtggaggtctcgggtcgtacctacccggtggaggtgcgctatcgt
ccgctgatccgcgacgaagatgacgaggaagaccgcaccctcagcgagggtatccttcac
gcggtggaggaaatcgagaccatcgagcgtgaaaagcgctggttccatggtccccgcgat
atcctggtgtttttgcccggtgagcgtgagatccgcgagaccgccgacgtgctccggcgc
gctgatctcaagagcacagagatactgccgctctacgccaggctgtcgaacgccgagcag
aaccgcgtgtttgctccccacagcgggcggcgcatcgtgctcgccaccaacgtggccgag
acctcgctgacggtgccgggtatccgctacgtgatcgacccggggctggtgcgcatcagt
cgctacagctatcgcgccaagattcagcgcctgccggtggaggcggtcagccaggccagc
gccaatcagcgcaagggccgctgcggtcgggtggcggaaggcgtgtgcatccgtctgtat
gacgaagacgacttcctggcgcgccctgagtttaccgatccggagatccggcgcaccaac
ctggcctcggtgatcctgtcgatgctgtcgctgaagctgggcgacatccaggactttccc
ttcgtcgatccacctgactcgcgctttgtcaccgatggcttcaagttgctctatgagctg
ggtgcggtcgacgacaacagccgcctgacgacattggggcgacggctggcgcgactaccc
atcgatccgcgcctggcccgcatggtgctggccggggtcgagcagcagagcctgcgcgag
gtgctgatcgtggtctcggcgctggcggtgcaggacccgcgtgatcgaccctccgacaag
cgcgaagccgccgatcaggcccaccgccgctggcaggatccggattccgacttcgtggcg
ctactcaatctgtggcacggcttcgaagccgcccgagaggaactctcgggcaaccggctg
cgtcgctggtgtcgcgataatttcctgaattacctgcgcctgcgcgagtggcacgatacc
ttccgccagttgcgtcaactgctcaaggacatggatatccaggtgccgtcggccaggccc
gccatcgccgccgaaggtgaagatgacgatggtcaggccaaggagcgaaagcgtcagcag
acggtggccatgcacaaggcgctgttgaccggcctgctgagccacctgggcatcctgacc
gagaaccgcgagtatcttggggcgcgcaatcgcaagttcatgattcatccggcatcgggg
ctttcgaagaagtctccgaagtgggtgatggcgatggagctggtcgagacctcgaagctg
ttcgcgcgcagcgtggccaaggtcgagccacagtggatcgagcctctggcgggccatctg
gtcaagcgcagctacagcgagccccattgggagatgaagcgggcacaggtggtggccttc
gaacaggtcaccctgttcgggctgccgatcgtggcccggcgcaagttccactatggcccc
atcgccccggtcgaaagccgtgagctgtttatccgccgggcgctggtggaaggcgagttt
cgcaccaagggcgagttcttcgcccacaaccgggcactgatcgacgaggttgaggacctc
gaggatcgcgcacggcggcgcgacattctggtggacgaggagcagctgttcgacttctac
gacgctcgcctgcctgaggatatcgtcaacggcaagggcttcgaagcctggcgccgcaag
gccgagcgcagtgaccctgagcttctcaagttcgaccgtcaggcgctgctggcacgggag
gcggatgacgtcaccggtgacgcctatcctgacgagctgtcgatcgacggtgtgcgctat
ccgctggcttatcacttcgcgccgggggccgaggatgacggtgtgaccatgacggtgccg
gcggcgatgctgtctcagctgtcgtcgtctcgcctcgagtggctggtgccgggattgctc
cgggacaagtgcatcgccctgttgaagtcgctgcccaagtcgatacgccgacaggtggtg
ccgatacccgactgggtcgacgcggcgctggaggcactggtgcccggggacggcagcctg
accgaggcgctcggtgaatttctgcgggtcaagaccgggctgcgcctgtcgccggacgac
tggcgcctcgatcagctcgagccccatctggtgatgaacctcaaggtggtcgaccacagc
ggcaaggtgctgggccagggccgcgacctgcgggcgctggagcggcgtttcgaggctgcc
gccagtcagggtgcccgggcgctggccaagagcgtggagagccagtccgagctgtcgggc
ttccccgagcaggcattgccggaatcgcgggtgacctcccaggccgggattcgtgtcgag
gcattcccggcgctggtgccttcgtctagcgggctcactctcgagctgttcgatcatccg
gccaaggcccatgaagcgcatcgccgcggggtggtcaaggcggcgatggaacggctgcca
gatcaagtgaaggccatcgagcgtacccagggactgtcgacctgtgctctattgttcgcc
aaggtaggcagcaagcgtgcactgaccgaagatgtggtgacagccgtcttccggcaggtc
gtggcggtggacccgctgccgcgcagtgccgaggccctggaacaacgcattcaggcggtt
cgccaggatatcgttccccatgccgacaagctggtggcggtgctcaagccggcactggag
ggccacctggcggtgacaaaggcgttgaagggtaacctgagcctgtcgctggcgctggta
tacagtgacctcaaggcacagatgcagcggctggtgtacccgggcttcgtgaccgacgcc
ggtgcctggctcgaggcttatccgcgctacatggaggccgcccaggtgcgcctggagaag
gccccgcgcgagcgcatgcgcgaccagatgctgatgcagacggtgcaggacttcgagacg
cgcctcgagacgcgtcgacaggccgagcaccgaggcggcgtcgaagatccatcgctggtg
gagtttcgctggtggatcgaggagttgagggtatcgctgttcgcgcagcagctgggtacc
gccatgccggtatcggagaagcgcctggagaaacgctgggcggaattgaccgggcggggg
taa
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integrated database retrieval system
