Halomonas sp. DN3: NKF27_07950
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Entry
NKF27_07950 CDS
T10930
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hadn Halomonas sp. DN3
Pathway
hadn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hadn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NKF27_07950 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hadn03019
]
NKF27_07950 (rne)
03009 Ribosome biogenesis [BR:
hadn03009
]
NKF27_07950 (rne)
Enzymes [BR:
hadn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NKF27_07950 (rne)
Messenger RNA biogenesis [BR:
hadn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NKF27_07950 (rne)
Ribosome biogenesis [BR:
hadn03009
]
Prokaryotic type
rRNA processing factors
NKF27_07950 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
USZ51411
LinkDB
All DBs
Position
complement(1787298..1790771)
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AA seq
1157 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GAERHGFLPLKEIAREYFVKEPSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFVSL
AGRFLVLMPNNARAGGISRRIEGEERAQLKEAMGQLSVPDKMGLIVRTAGIGRSPEELQW
DLDYLVQVWESITEEAGKRAAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEVHQEALA
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYEREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRA
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCDGQGTIRDVRSLSLSV
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRAILADIERRQGVRVVILPSPDMDTPHY
DVQRLRDDHVDEEGTANASSFELSTDTEVGKEPDAAFGKPVQRAEAAVKSVVHNAPAPAS
LSQEEAASEDKPAQPSRQPSAQGAQSGRQASSSSRRQSSPQANRQPGRQSPAESRQAVQN
AGLFGRLVKGFARFLGGEEETSNGATSGSQGSSNTRTQSSSRDDNAQRGAQQRSDSGQQR
GSDTRQRNRRGGSQNGQRQSSNRSNRSDGNSQDRRQQERRQPAAKSDGRTDARSDARTDS
KADTRADRNDGNDNRQRSRRDDNRQQDNRQAEGRQQEGRQQESRQPDSRKSDDNKSPRSA
SRGETQQADAASSDAAKDSKPKRTRNNPRNRSRKHAINPEALKEQQRLQAEAAAAQEAQP
DADQASATEATAEQTQPEAKAETRAEAPKADAKTDAKAEASKTEAPKADAKAEAPKADDK
ADAKAEAPKADTKPVANAAAPKSDDAKPVEKDEPKTEAKAETPKADAQPAEKAEPKAEAK
AETPKADTKPAEKADEKAEPKAEAKTETPKADAQPAEKAEPKAEAKAEAPKPEAPKTEAP
KAETPKAETPKGEAPKADTKPAEKADEKAEPKAEAKAEAPKADAKPAEKAEAKAEALKAD
VKAEEKVEAKAEAPKADVKAEEKAEADNAKTEAKAEDDALSGATDDGQAPRRRRRAHNDP
RERRKLEAEKASDGHNS
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaacgcgacccagcccgaagagctgcgtgtcgccctggtggat
ggacaacgcctgtacgacctggacatcgaatccggtgccagggaacagaaaaaagccaat
atctatcgcggcaagatcacccgcgtggaaccctccctcgaagccgcctttgtcgatttc
ggcgccgaacgccacggttttctgcccctcaaggaaattgctcgcgagtacttcgtcaag
gagccttccggccgccccagcatcaaggaagtactgaaggaaggtcaggaagtcatcgtt
caggtcgacaaggaagagcgtggcaacaagggcgccgccctgaccacctttgtcagcctg
gccggccgcttcctggtgctgatgcccaacaacgcccgcgcaggcggcatttcgcgtcgc
atcgaaggcgaggaacgcgcccagctgaaggaagccatgggtcagctcagcgtgcccgac
aagatgggcctgatcgtgcgcaccgccggtatcggtcggtcgcccgaagagctgcagtgg
gacctcgactacctggtacaggtgtgggaatccatcaccgaggaagccggcaagcgcgcc
gcccccttcctgatctaccgcgagtccaatgtcatcattcgcgccatgcgcgactacctg
cgccaggatatcggcgaggtactgatcgacagccccgaggtgcaccaggaggcgctggcc
ttcattcggcaggtgatgccgtcctaccagcagaagatcaagctatacgccgacgaggtg
ccgctgttctcgcgcttccagatcgagtcgcagatcgagaccgcctacgagcgtgaagtg
aagctgccctccggcggctccatcgtgatcgaccacaccgaggcactggtgtccatcgac
atcaactcggcgcgagcgacacgcggcagtgacatcgaagagactgcgctgcagaccaat
ctggaggcggccgacgagatcgctcgccagttgcgcctgcgtgacatcggcggcctggtg
gtcatcgatttcatcgacatggggccagcacgcaaccagcgtgaggtcgaaaaccgcgct
cgcgatgccctcaagctcgaccgcgcccgggtacagatcggccgtatttcgcgctttggc
ctgatggaaatgtcgcgtcagcgtctgcgcccgtccctcggcgaaaccagcggcgtggta
tgcccccgctgtgacggccagggcaccatccgtgacgtgcgttcactctcgctgtcggtc
atgcgcctgatcgaagaagaggccatgaaggagcgcagcgctcagatccgcgccatcctg
ccggtgcctgtcgctacctatctgcttaacgagaagcgcgccatcttggccgatatcgag
cgtcgccagggcgtccgcgtggtcatcctgccaagcccggacatggacaccccccactac
gacgtccagcgtctgcgcgacgatcacgtcgacgaggaaggcaccgccaacgcctccagt
ttcgagctgtccaccgacaccgaggtcggcaaggagcccgacgccgcctttggcaagccg
gtgcaacgcgccgaagccgcggtcaagagcgtggtccacaacgccccggcccccgcttcc
ttgagccaggaagaggccgccagcgaggacaagcccgcacagccgagtcgccagcccagc
gctcagggcgctcaatccggtcgccaggcctcgtcgtccagccgcaggcagagcagccct
caggctaatcgccagccaggccgtcagagccccgcagagtctcgccaggcggttcagaac
gccggcctgttcggtcgactggtcaagggcttcgctcgcttcctcggcggcgaggaagaa
accagtaacggcgccacgagcggcagccaaggctcgagcaacactcgcactcagtcctcg
agtcgcgacgacaatgctcagcgcggcgcccaacagcgcagcgacagcggccagcagcgc
ggtagcgacacgcgacagcgcaatcgccgcggtggcagccagaacggccagcgtcagagc
agcaacagatccaaccgtagcgatggcaacagccaggatcgtcgtcagcaggaacgccgc
cagccggccgccaagagcgacggccgcaccgacgctcgcagcgacgcacgcaccgacagc
aaggcagacactcgagccgacagaaatgacggcaacgacaaccgccagcgctctcgccgc
gacgacaatcgtcagcaggacaaccgccaggctgaaggacgtcagcaggagggtcgtcaa
caggaaagccgccagccggatagccgcaagagcgacgacaacaagtcgccccgttcggcc
agccgcggtgaaacgcagcaggcagatgctgccagcagcgatgctgccaaggacagcaag
cccaagcgcacccgcaacaatccgcgcaaccgcagccgcaagcacgccatcaaccccgag
gcgctgaaagagcagcaacgcctgcaggcggaagcggccgcggctcaggaagctcagccc
gatgcggaccaggcaagcgctacggaagctacggccgaacagacccagcccgaagcaaaa
gccgaaacaagagccgaagcccccaaggctgacgccaagactgacgccaaggccgaagcc
tccaagactgaagcccccaaggctgacgccaaagccgaggctcccaaggctgacgacaag
gccgacgccaaagccgaggctcccaaggcggataccaagcccgtcgccaacgccgcggct
cccaagtcggacgacgccaagcccgtagagaaagacgagccaaagaccgaagccaaggcc
gagactcccaaggctgacgcgcagcctgcagagaaagccgagccgaaagccgaagccaag
gccgagactccgaaggctgacaccaagcctgcagagaaagctgacgagaaagccgagcca
aaagccgaagccaagaccgagactcccaaggctgacgcgcagcctgcagagaaagccgaa
ccgaaagccgaagccaaggctgaggctcccaagcccgaggctcccaagactgaggccccc
aaggccgagacgccaaaggccgagacgccaaagggcgaggctcccaaggctgacaccaag
cctgcagagaaagctgacgagaaagccgagccgaaagccgaagccaaagccgaggccccc
aaggctgacgccaagcccgcggagaaagccgaagccaaggccgaagctctcaaggctgac
gtcaaggcggaagagaaagtcgaggccaaggccgaagctcccaaggctgacgtcaaggcg
gaagagaaagccgaggccgacaacgccaagacagaagccaaggcagaagacgacgccttg
agtggcgccactgatgatggccaggcgcctcgccgccgtcgccgggcccacaacgacccg
cgcgagcgtcgcaagctcgaggccgaaaaggcaagtgacggccacaacagctga
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