Halomonas sp. DN3: NKF27_09265
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Entry
NKF27_09265 CDS
T10930
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hadn Halomonas sp. DN3
Pathway
hadn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hadn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NKF27_09265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hadn03019
]
NKF27_09265
Enzymes [BR:
hadn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NKF27_09265
Messenger RNA biogenesis [BR:
hadn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NKF27_09265
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
P-loop_SecA
HI1480
AAA_22
Utp25_C
UTP25_NTPase-like
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
USZ51659
LinkDB
All DBs
Position
complement(2138970..2140316)
Genome browser
AA seq
448 aa
AA seq
DB search
MSFSDLGLRAELLRAVTAQGYDTPTPIQRQAIPAVLKGGDLLASAQTGTGKTAGFTLPML
QRLADGPRPSKRQVRALVLTPTRELAAQVGESVRDYGQHLSLRHHVIFGGVGQQPQIDAL
RPGLDVLVATPGRLLDLHQQGHVDLSSVEILVLDEADRMLDMGFIHDIRRVLKLLPEKRQ
NLLFSATFSSEIQALADKLLDRPEMIEVARRNTTAETVDQAVYRVDRERKRELLSHLITS
QRWFQVLVFTRTKHGANRLAEHLDKRDISAMAIHGNKSQSARTRALAAFKSGELQVLVAT
DIAARGLDIDELPHVVNFELPNVAEDYVHRIGRTGRAGNEGQAISLVCVDEHGLLKNIER
MIKRDLEKRIEPGFEPDPNAKPEPIENGRNKRGGGQRRSQGGNNSSQRGNGRRGDGGGGG
GNARNGNGEQPARRRRRRSGQGNRQGQA
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttccgatctcggcctgcgtgccgaattgcttcgcgccgtcacggcgcaaggc
tatgacaccccgactccgattcagcgtcaggccatccccgcggtactcaagggtggcgac
ctgctggccagtgcccagaccggcaccggcaagacagcgggctttaccctgccgatgctg
cagcgcctggccgatggccctcgcccctccaagcgccaggtccgtgccctggtgctcacg
cccacccgtgaactcgccgcccaggtcggcgagagcgtgcgcgactacggtcagcacctg
tcgctgcgtcaccacgtgatcttcggtggcgtcggccagcagccccagatcgacgccctg
cggcccggtctcgatgtgctggtggcaacgcctggccgcctgctcgacctgcaccagcag
ggccacgtggatctgtcgagcgtcgagatcctggtactcgacgaagccgaccgcatgctc
gacatgggctttatccacgacatccgccgtgtgctgaagctgttgcccgagaagcgtcag
aacctgctgttctcggcgaccttctccagcgagattcaggcgctggccgacaagctgctc
gaccgcccggaaatgatcgaggtcgcacgccgcaacactaccgccgagaccgtcgaccag
gccgtctaccgagtggaccgcgagcgcaagcgcgagctgctgtcacacctgatcaccagc
cagcgctggttccaggtgctggtgttcacccgcaccaagcacggcgccaaccgcctggcc
gagcacctcgacaagcgcgacatctccgccatggcgatccacggcaacaagagccagtcc
gcgcgcacccgcgccctggcggcgttcaagtccggcgagctgcaggttctggtggctacc
gacatcgccgcccgtggtctcgacatcgatgagctgccccacgtggtcaacttcgagctg
cccaacgtcgccgaggactacgtccaccgcatcggtcgtaccggtcgtgccggcaacgaa
ggccaggccatctcgctggtgtgcgtcgatgagcatggccttctgaagaacatcgagcgc
atgatcaagcgtgacctcgagaagcgcatcgaaccgggcttcgagcccgaccccaacgcc
aagccggaacccatcgagaacggccgcaacaagcgcggtggtggtcaacgccgcagccag
ggtggcaacaacagctcccagcgcggcaacggacgacgtggtgacggcggcggtggcggc
ggcaatgcccgcaacggcaatggcgagcagcctgcacgtcgcaggcgcaggcgctccggc
cagggcaaccgccagggacaggcataa
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