Halomonas sp. DN3: NKF27_09495
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Entry
NKF27_09495 CDS
T10930
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
hadn Halomonas sp. DN3
Pathway
hadn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hadn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NKF27_09495 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hadn03400
]
NKF27_09495 (recD)
Enzymes [BR:
hadn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NKF27_09495 (recD)
DNA repair and recombination proteins [BR:
hadn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NKF27_09495 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
Helicase_RecD
AAA_22
AAA_16
UvrD-helicase
AAA_28
SLFN-g3_helicase
NTPase_1
nSTAND3
T2SSE
DUF3322
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
USZ51700
LinkDB
All DBs
Position
complement(2198947..2201184)
Genome browser
AA seq
745 aa
AA seq
DB search
MSETNPEVHSTENGETPSAMTTTALPSTPFASPEQALADPEALLSLLFAWAEHGWIRDLD
AALPHRLARLAPDGDASCLLAAMLVSHQAGQGHLLLDLNQARRQPESLIAVARDVARDDT
APPPPEALLSRLGDDWVHRLQRWSAVAQGPGASPLVLEAERLYLRRYWRNEQRVASAIAA
RLSTSDAPTKDHPTEDTPTENHPTADSDAARLRPVLDTLFPPSDPRAAQAASQKLACALG
ARAPFAVITGGPGTGKTTTVIRLLALLQTQAIAERGAPLAIRLAAPTGKAAARLSESIRD
QIAALDELPLPDAARVRASIPHEVSTLHRLLGARPDTRHFHHHRLNPLPLDMVAVDEASM
VDIDMMAALLDALPPHARLVLLGDKDQLASVEAGAVLGNLCARAEQGHYRNDVSHWLEAA
TGLSLPEALHDSDGRALDQSVAMLRHSFRFDDASGIGQLARAINAGDSRRALAVLDDDAF
PQAQRQALPRANERRLMTLALDGRGQDAAWGYRFYLGAITPRPDTPEAGALEQSGLLRPR
PALSSERVEWDRWASAILEAHAQFQLLTPLRAGHYGVESLNQRIEQALARAGLIDKPDHS
THWYEGRPVLVTGNDCALKLMNGDIGIALKVPVEFANPEAGTTLRVAFPAGDGQGGIRWV
LPSRLQRVETVFAMTVHKSQGSEFVHTALVMPDTLSPILTRELVYTAVTRAKKTFTLLSA
SDVVLAKAIERRIARQSRLFQSPGT
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagactaaccctgaggttcacagcacagagaacggcgagactccgagcgcaatg
accacgaccgccctgccgtccacgccctttgccagcccggaacaggcactggccgacccc
gaagccctgctgtcgctgctgtttgcctgggcagagcacggctggatccgtgatctggac
gcggcactgccccatcggctggccaggctcgccccggacggcgacgccagctgcctgctg
gcggccatgctggtcagccaccaggccggccagggccatctgctgctggacctgaatcag
gcccgccgccagcccgagtcgctgatcgccgtcgctcgcgacgtggcgcgtgacgacacc
gccccgcccccgccggaggccctgctcagccgactcggcgacgactgggtacaccggctt
cagcgctggtcggcggtggcgcaaggcccaggcgcaagccccctggttctcgaggcagag
cgcctctatctacgccgctactggcgcaacgaacagcgagtcgccagcgccatcgccgcg
cggctgtcgacgtccgacgctccaaccaaggatcatccaaccgaggacactccaaccgag
aaccatccgaccgccgacagtgacgccgcccgcctgcgtccggtactggacaccctgttt
ccaccgtccgatccgcgtgccgcccaggccgcctcccagaagctcgcctgtgcgctgggc
gcacgcgcgcccttcgcggtgatcaccggcggccccggcaccggcaagaccaccaccgtc
atccgtttgctggcgctgttgcagacccaggccatcgctgagcgcggcgcccccctggcg
atacgcctggccgcccccaccggcaaggcggcggcgcgactcagcgagtccattcgtgac
cagatcgccgccctcgacgaactgccgctgcccgacgccgcccgggtgcgcgcatcgatt
ccccacgaggtctcgactcttcaccggctgctcggcgcccggcccgatacccgtcacttc
catcatcatcgcctcaaccctctgccactggacatggtggcggtggacgaagcgtcgatg
gtcgatatcgacatgatggcggcactgctcgacgccctgccgccccatgctcgcctggtg
ctcctcggcgacaaggatcagctcgcctcggtggaggccggcgcggtgcttggtaacctg
tgcgcccgggccgaacagggtcactatcgcaacgatgtcagccactggctcgaagcggct
accggcctttcgttgcccgaagcgctgcacgacagcgacggccgggcgctggatcaatcc
gtcgccatgctgcgccactcctttcgcttcgatgacgccagcggtatcggccagctcgcc
cgcgccatcaacgcaggcgacagccggcgggcactcgcggtgctggacgacgacgccttt
ccccaggcccagcgccaggcccttccccgcgccaacgagcggcgcctgatgaccctggcg
ctggacggccgaggccaggacgcagcctggggctatcgcttctatctgggcgccatcacc
ccgcgccccgacaccccggaagctggcgcactcgagcaaagcggcctgctgcggccacgc
ccggcgctctcgtccgagcgagtcgagtgggaccgttgggcctctgccatcctcgaggcc
cacgcccagttccagttgctgacgccgctgcgcgccggccactacggcgtcgaatcgctc
aatcagcgcatcgagcaggcgctggcgcgggccggactgatcgacaagccggatcacagc
acccactggtacgaaggccgtccggtgctggtcaccggcaacgactgcgcgctcaagctg
atgaacggggatatcggcattgccctcaaggtaccggtggagttcgccaacccagaggcc
ggcaccaccctgcgcgtagccttccccgccggcgatggccagggcggcatccgctgggtg
ctgcccagccggctgcagcgggtcgagacggtattcgcgatgacggtgcacaagtcccag
ggctccgagttcgtccataccgccctggtgatgccggacaccctgtcgccgatcctgacc
cgcgaactggtctacaccgccgtcacccgcgccaagaagaccttcactctgctcagcgca
agcgacgtggtgctggccaaggccatcgaacggcggattgcgcgtcagagtcggctgttt
cagtcgcccggaacatag
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