Halomonas sp. DN3: NKF27_18695
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Entry
NKF27_18695 CDS
T10930
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hadn Halomonas sp. DN3
Pathway
hadn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hadn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NKF27_18695 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hadn03021
]
NKF27_18695 (rpoC)
03400 DNA repair and recombination proteins [BR:
hadn03400
]
NKF27_18695 (rpoC)
Enzymes [BR:
hadn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NKF27_18695 (rpoC)
Transcription machinery [BR:
hadn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NKF27_18695 (rpoC)
DNA repair and recombination proteins [BR:
hadn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NKF27_18695 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
DUF3150
Motif
Other DBs
NCBI-ProteinID:
USZ49494
LinkDB
All DBs
Position
complement(4316526..4320743)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLVKVLKSQSQSDEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMLMDMTLRDIERVLYFESFMVVDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAVQAMLKDIDLEEEIERLREEIPQTNSETKIKKLSKRLKLLEAFQGSGNDPAWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQASGQASTIKAAKKMVERELPEVWDILADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYYMTRERINAKGEGMVFSDLNEVERAFGTQ
NVSLHARVKVRLDEVDIDEETGERSEHRRLRDTTVGRALLFRILPQGVPFDLVDQAMKKK
AISKLINEVYRRAGLKAAVIFADQLMYTGFRLATWSGASIGVNDFVIPDAKAEIVEAAEE
EVKEIEDQFSSGLVTAGEKYNKVIDIWARANDQVAKAMMAGISKETVIDREGKEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTERGLTLHPVIEGGDIIVSLAQRV
LGRVVAQDVIDPSTDEVLIPRGTLLDEAWCEQLDTMGVDEIIVRSTITCETSHGVCSSCY
GRDLARGHQVNIGESAGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQVKHGGKVR
LHNIKYVERADGKLVVVSRSSALAVADEHGREREYYKLPYGAELSVRDGDAVDPGQAVAK
WDPHTHPIVAEAEGQVHYVDMDEGLTMHRSVDEMTGLSSIEIIESAARPMAGRDKRPMIM
LNDAAGKPVTVSGSDTPVQYPLPGKAIVTVDNGSSIGIGEIVARIPVEASGNKDITGGLP
RVADLFEARKPKEPSILAEISGVISFGKETKGKRRLTITPSEGDPFEMLIPKWRQIAVFE
GETVEKGEVISDGPSNPHDILRLLGIAELAKYIVAEVQDVYRLQGVGINDKHIEVIVRQM
LRKVEITDAGDSDFIPGDQVELVRVLEQNAVLQANDKFPAKYQRLLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLTHHEERRRKREDTERLL
QPSAYDVEQELGAQLTALDSDDDEI
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtcctcaaatcgcagtcacagtccgacgagttcgacgcgatc
aagatcacgctcgcgtcgccggacatgatccgctcctggtcctttggcgaggtcaagaag
ccggagaccatcaactaccggactttcaagcccgagcgtgatggcctgttctgcgccaag
atcttcggtccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcatcatctgcgaaaagtgcggcgtcgaagtcaccaaggccgccgtgcgccgcgag
cgcatggggcacatcgagctggcaagtccggtcgcccacatctggtttctgaagtcgctg
ccgtctcgcatcggcatgctgatggacatgaccctgcgcgacatcgagcgcgtgctctat
ttcgagagcttcatggtcgtcgatcccggcatgaccaccctcgagcgtggccagctgctc
aacgacgagcagtacttcgaggccctcgaggagttcggcgatgacttcgacgcccgtatg
ggtgccgaggccgtccaggcgatgctcaaggatatcgatctcgaggaagagatcgagcgt
ctgcgcgaagagatcccgcagaccaactccgagaccaagatcaagaagctgtccaagcgt
ctgaagctgctcgaagccttccagggctccggcaacgatccggcgtggatggtgatggaa
gtgctgcccgtgctgccgccggacctgcgtccgctggtaccgctggatggcggccgcttc
gcgacctcggatctcaacgatctgtaccgtcgcgtgatcaaccgcaacaaccgcttgaag
cgtctgctcgacctcaacgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatccgtcgatgcgctgctcgacaacggtcgtcgcggtcgcgccatcaccggctccaac
aagcgtccgttgaagtcgctggccgacatgatcaagggcaagcaggggcgtttccgtcag
aacctgctgggcaagcgcgtcgactactccggccgctcggtcatcaccgtgggcccgacc
ctgcgtctgcaccagtgcggtctgcccaagaagatggcgcttgagctgttcaagccgttc
atctactccaagctgcaggccagcggccaggcgtccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgccggaggtgtgggacatcctcgccgacgtcatccgcgagcacccg
gtgcttttgaaccgcgccccgaccctgcaccgtctcggtatccaggcgttcgagccgctg
ttgatcgaaggcaaggcgatccagctgcacccgctggtgtgtgccgcctacaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgctgacgctggaagcccagctcgaagcg
cgcgcgctgatgatggccaccaacaacgtgctgtcaccggccaacggcgagccgatcatc
gtgccgtcccaggacgtggtgctgggtctgtactacatgacccgcgagcgcatcaacgcc
aagggcgagggcatggtgttctccgacctcaacgaggtcgagcgcgccttcggcacccag
aacgtgtcgctgcacgcccgcgtcaaggtgcgcctggacgaggtcgacatcgacgaagag
accggcgagcgctccgagcaccgccgtctgcgtgacaccaccgtcggccgtgcgctgctg
ttccgcatcctgccgcaaggggtgcccttcgatctggtcgaccaggccatgaagaagaag
gccatctccaagctgatcaacgaagtgtatcgtcgcgccggtctcaaggccgcggtcatc
ttcgccgaccagctgatgtacaccggcttccgtctggccacctggtccggcgcctccatc
ggcgtcaacgacttcgtcatcccggacgccaaggccgagatcgtcgaggcggccgaggaa
gaggtcaaggaaatcgaggaccagttctcctccggtctggtgaccgcgggcgagaagtac
aacaaggtcatcgatatctgggcgcgtgccaacgaccaggtcgccaaggcgatgatggcg
ggcatctccaaggagaccgtgatcgaccgcgaaggcaaggaagtcgaacaggactccttc
aacagcgtgttcatcatggccgactccggtgcccgtggtagcgccgcccagatccgccag
ctggcgggtatgcgtggtctgatggccaagccggatggctcgatcatcgagaccccgatc
gtcgccaacttccgtgaaggtctgaacgtactccagtacttcatctcgacccacggtgcg
cgtaagggtctggcggataccgccctgaagaccgccaactccggttacctgacccgtcgt
ctggtcgacgtcgcccaggacgtggtcatcaccgaggtcgactgtggcaccgagcgtggc
ctgaccctgcacccggtcatcgaaggcggcgacatcatcgtctcgctggcccagcgtgta
ctcggccgagtggtcgctcaggacgtcatcgacccgagcaccgacgaagtgctgattccg
cgtggcaccctgctggacgaggcctggtgcgagcaactcgacaccatgggcgtcgacgag
atcatcgtgcgcagcaccatcacctgtgaaaccagtcacggtgtgtgttcgtcctgttac
gggcgcgatctggcccgcggccaccaggtcaacatcggtgagtcggccggcgtcatcgcc
gcccagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggt
gccgcctcgcgggcctctgcggtggacagcgtccaggtcaagcatggcggcaaggtgcgc
ctgcacaacatcaagtacgtggaacgcgccgacggcaagctggtcgtggtgtcgcgctcc
agcgccctggcggtggccgacgagcatggccgcgagcgtgagtactacaagctgccttac
ggtgccgagctttcggtgcgtgacggtgacgcggtcgatcccggccaggccgtggccaag
tgggatccgcacacccacccgatcgtcgccgaagcggaaggccaggtgcactacgtcgac
atggacgaaggcctgaccatgcaccgcagcgtcgacgagatgaccggtctgtcctcgatc
gagatcatcgagtccgcggcgcggccgatggccggtcgcgacaagcgcccgatgatcatg
ctcaacgacgccgccggcaagccggtgaccgtctccggcagcgacactccggtgcagtac
ccgctgcccggcaaggcgatcgtcaccgtcgacaatggctcgtccatcggcatcggtgag
atcgtcgcgcgtatcccggtggaggcgtccggcaacaaggacatcaccggtggtctgccg
cgcgttgccgacctgttcgaggcgcgcaagccgaaggagccgtccatcctggccgagatc
agcggtgtgatcagcttcggcaaggaaaccaagggcaagcgtcgtctgaccatcaccccg
tccgaaggcgaccccttcgagatgctgattcccaagtggcgtcagatcgcggtgttcgag
ggcgagacggtcgagaagggcgaggtgatctcggatggtccgagcaacccgcacgacatc
ctgcgactgctcggcatcgccgagctggccaagtacatcgtggccgaggtgcaggacgtc
tatcgtctgcagggcgttggcatcaacgacaagcacatcgaagtgatcgtgcgtcagatg
ctgcgcaaggtcgagatcaccgacgccggtgactccgacttcattccgggtgatcaggtc
gagctggtccgtgtgctggagcagaatgccgtgctccaggccaatgacaagttcccggcc
aagtaccagcgcctgctgctgggtatcaccaaggccagcctggccaccgagtcgttcatc
tctgcggcctccttccaggagacgacccgcgtgctgaccgaagcggcggtcaccggcaag
cgcgactacctgcgcggcctgaaggaaaacgtggtggtgggacgtctgatcccggccggt
accggtctgacccaccacgaggagcgtcgtcgcaagcgtgaagacaccgagcgactgctc
cagccgtcggcctacgacgtcgagcaggagctgggcgcccagctcaccgcgctggactcg
gacgacgacgagatctga
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integrated database retrieval system
